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Sample 3300028264
3300028264: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0666-MT (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300028264 Open in IMG/M GOLD Reference Gs0114432 | Gp0296269 | Ga0256893 Sample Name Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0666-MT (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 188516404 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1 1 Not Available 1 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
Alternative Ecosystem Assignments
Environment Ontology (ENVO) terrestrial biome → research facility → soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location USA: Iowa Coordinates Lat. (o ) 42.0 Long. (o ) -93.0 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F032070 Metagenome / Metatranscriptome 181 Y F071833 Metagenome / Metatranscriptome 121 Y F098404 Metagenome / Metatranscriptome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0256893_1038773 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1 1035 Open in IMG/M Ga0256893_1063148 Not Available 759 Open in IMG/M Ga0256893_1080612 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 646 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0256893_1038773 Ga0256893_10387731 F032070 SAVPAYTGAPDFGLIHINPEETAKAFQAYLDTASKLTGVSLDDIRTTVSALPQNQERVTLTELLSLGMKLFDAIVWLTAGRPKSHPLSIDPSLTKDKIPSMHEVARSVFYCYFMLVTQARYPVGRNETEKPRIPNFLKTIMGMEKEQHVYVDVICSFSPQKFDPAWAKYVSFANFGQEVLSRFGLGVAGYRMFGPFGLYNPKPDMDPELKPAFEFARTVAKAPSSWNVHPLTRNPNILTARGNLNKNLNNLLLDAFTQADLEEMERAKVIYKIPTREPAHRQYRQWTSNDDITGSALIFR Ga0256893_1063148 Ga0256893_10631481 F071833 IMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDVEACRKEENHRFATELKETFSQL Ga0256893_1080612 Ga0256893_10806121 F098404 TVMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWFHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPRECHLGSQ
