NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028453

3300028453: Goat Fecal Pellet Co-assembly of all samples treated with penicillin and streptomycin from Gen5 and Gen10



Overview

Basic Information
IMG/M Taxon OID3300028453 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0242242 | Ga0307246
Sample NameGoat Fecal Pellet Co-assembly of all samples treated with penicillin and streptomycin from Gen5 and Gen10
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size310412197
Sequencing Scaffolds6
Novel Protein Genes8
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E22
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039698Metagenome / Metatranscriptome163N
F046107Metagenome / Metatranscriptome151Y
F086383Metagenome / Metatranscriptome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307246_1049487All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.1609Open in IMG/M
Ga0307246_1049754All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21601Open in IMG/M
Ga0307246_1051602All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21546Open in IMG/M
Ga0307246_1075978Not Available1029Open in IMG/M
Ga0307246_1117805Not Available615Open in IMG/M
Ga0307246_1130708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia546Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307246_1049487Ga0307246_10494875F086383IIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDPEVEARLISNEKKRLGL
Ga0307246_1049754Ga0307246_10497542F046107KKAQKYYVFRQVVLCGNFPFLTNEKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRNSAKPTIFWNMVTQMNL
Ga0307246_1051602Ga0307246_10516021F046107YAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSSVH
Ga0307246_1075978Ga0307246_10759781F086383MIEKLAEYLTQKSYTVKTIFPMQNEMMQHILTSYDLTISEKALLSALDRSIIYNHQNFSNFDIVLWNTSIISSYAFHTTAEVKASFIKSINRFFPAMDIIIVVQPLQENNQILDKFSSLIQQFDNVYPVNFVDGGVDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLIS
Ga0307246_1096800Ga0307246_10968001F086383MTLHIALDGIYVNVNHIIVQKLVEYFTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDVIKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSNNCKDYAKEEQN
Ga0307246_1107185Ga0307246_11071851F086383MTLHIALDGIYVNVNHIIVQKLVEYLTEKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLGDKNQIIQKFNDVIKQFDNVYPVNFVNGAIDLTFKETIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKE
Ga0307246_1117805Ga0307246_11178051F046107KLKNTKYLGKLYFAGIFPFLTNKKEIKPKKKKIFKIDSVVSTKLSLESSFIELLGRDSPFVEIDDDDDSVLSLCLISMKSTLNYQQ
Ga0307246_1130708Ga0307246_11307082F039698MTQPPQQPPTQVFAQKRRSGCGTLLVALLVLAIITAIVIFLGA
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