NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300028483

3300028483: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36



Overview

Basic Information
IMG/M Taxon OID3300028483 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116274 | Gp0272180 | Ga0233377
Sample NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size240474292
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
Not Available1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001230Metagenome / Metatranscriptome741Y
F036964Metagenome / Metatranscriptome169Y
F037916Metagenome167Y
F041521Metagenome159Y
F049900Metagenome146Y
F053537Metagenome / Metatranscriptome141Y
F060691Metagenome / Metatranscriptome132Y
F086140Metagenome / Metatranscriptome111Y
F087402Metagenome / Metatranscriptome110Y
F104679Metagenome100Y
F105520Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233377_1002669All Organisms → cellular organisms → Bacteria → Proteobacteria6284Open in IMG/M
Ga0233377_1004814All Organisms → cellular organisms → Bacteria4411Open in IMG/M
Ga0233377_1004896All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter4367Open in IMG/M
Ga0233377_1005549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4011Open in IMG/M
Ga0233377_1009537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2808Open in IMG/M
Ga0233377_1013191Not Available2253Open in IMG/M
Ga0233377_1040211All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii1038Open in IMG/M
Ga0233377_1055368All Organisms → cellular organisms → Bacteria → Proteobacteria837Open in IMG/M
Ga0233377_1066544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae738Open in IMG/M
Ga0233377_1084585All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae629Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233377_1002669Ga0233377_10026691F086140MATQTVQQVVDYLKAHPDVARKAMDYVKSHPGDVKNALKEVATERGWDLSKIDTAAITKELGNIVPH
Ga0233377_1004814Ga0233377_10048142F001230VQLTADAAIANAHAWFEVNSGWAPPDEDTLAEWVDDGVCRCPDECLVEPDAWCDHGLASWWLILGALD
Ga0233377_1004896Ga0233377_10048964F037916VSASRAVPSVLYRWRAVAQGGSTVALKRDAQRKPRKDDAEARYKAEIDRLRAVVTEITAENLELKKKI
Ga0233377_1005549Ga0233377_10055494F060691MLMAVEGMDPTLKMIFFAAAVVLFALAAIGYSRGKVSFLAAGLAAFAIPFFWDALVAS
Ga0233377_1006732Ga0233377_10067323F104679MSPILIDRPVVTVSVLRPLLGDSVVVRTASALWRGTLLSCVKDSAWFVVDDVDVVVPLDDLLSVRAA
Ga0233377_1009537Ga0233377_10095375F049900VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG
Ga0233377_1013191Ga0233377_10131911F041521VDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233377_1022748Ga0233377_10227482F104679MSPILVDRPVVTVSVLRPLLGDSVVVRTASALWRGTLLSCVKDSAWFIVDDVDVVVPLDDLLSVRAA
Ga0233377_1040211Ga0233377_10402111F087402MARGRVVEFDYYQFVTLLRRATDASQRIDKGDPRWAEYVKTNGINEVAATAIARQKFEGATPVIIAEGKDTDGLYFHSKNEEACL
Ga0233377_1055368Ga0233377_10553682F053537MKYMHKAIWQADGNLVIRGNTRALLFRALDDARAELGRHGDAADPQAVRTLQALQDVLGAYDGALPSAADLLGDPQRERLARNLLKG
Ga0233377_1066544Ga0233377_10665442F036964MINLIDILKIIFPALMVAGALGSFVLNVITNWQNWPVSLQWIGAALLYTALLFRNQ
Ga0233377_1084585Ga0233377_10845852F105520LTSGPPARRHAAAMDAKPKLDLPRTELDFLQRLLLDLQRRLQAGGDCHDEEHVAALELALAILQWDGTVPPPLDAQVGLGAAVESRLGPDAMCALRQWRTERRKALAPVQAPAR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.