NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028580

3300028580: Sewage microbial communities from Oakland, California, United States - Biofuel 10 (Illumina Assembly)



Overview

Basic Information
IMG/M Taxon OID3300028580 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0134355 | Gp0307528 | Ga0268357
Sample NameSewage microbial communities from Oakland, California, United States - Biofuel 10 (Illumina Assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size176743601
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSewage Microbial Communities From Oakland, California, United States
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Sewage → Sewage Microbial Communities From Oakland, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)37.82Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004177Metagenome / Metatranscriptome449Y
F011098Metagenome / Metatranscriptome295Y
F024459Metagenome / Metatranscriptome205N
F025048Metagenome203Y
F030458Metagenome185Y
F041367Metagenome / Metatranscriptome160Y
F083634Metagenome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0268357_101414All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales16115Open in IMG/M
Ga0268357_105787All Organisms → cellular organisms → Bacteria → Acidobacteria3505Open in IMG/M
Ga0268357_106017All Organisms → cellular organisms → Bacteria3396Open in IMG/M
Ga0268357_108465All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2465Open in IMG/M
Ga0268357_111346All Organisms → cellular organisms → Bacteria1893Open in IMG/M
Ga0268357_115211Not Available1455Open in IMG/M
Ga0268357_136457Not Available649Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0268357_101414Ga0268357_10141411F083634MYIMLKMADQTISLDRIRIGGRVCRLARKLFVTVEHENDRLTLSNEEFGLVVSAETLEEGIAGISEELATLWEVYVDADPANLTADALRLRSNLTSLVPAGVSL
Ga0268357_105787Ga0268357_1057876F025048MLNPTLITDAIASVLLSIPELYAAMGGRITAFHYRLGQEHRLAEAIYKMPAPSMLIVWEGTKGGSFDGQTIWKHRWGVYYRMGNAAGVAEPVGYEDLWWITCNCPPGGSGPNIRYLQLYPGLDIMDTPSIDHELDEDLIDRFKGLFIIPEIGDN
Ga0268357_106017Ga0268357_1060173F004177MVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQRLYLNRPVTVGDVKGYVQAAPTGSGLTFTIYVGGTVWLTLTIPAGQTAVVATPSQISTLTQIPANTAVSIGISAVGTTFPGASLSVFIYS
Ga0268357_108465Ga0268357_1084653F030458RITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA
Ga0268357_111346Ga0268357_1113461F011098VRRASLGRAIAESVVPGLTCLVLAAAVITALGWWFHAHYALSWQSPVAVHFQLPFVLAERTVSEGALQAQADQQGRGLTAWQQYACRKFGPDCRVALAIQRAENAAGKCEIYHYNTDGTLDWGYFQINTVHLKRPGLNLRDLLDCKANIDFAYQLFREKGGFTPWSTYKDGRYLRYMGVN
Ga0268357_115211Ga0268357_1152111F024459PANTTTYSITLDNIVWSAVAGFQSYVLFASTQDDLICGQQLSTVGNVVASGTLTATGDGTTYTPASVTLNRPLVRSTFALPSPYVDKVRIKAKRIIQGGVVGFSVDSVAAGVVVSGSLAVAPPAANPNFTPVGRIVSVYGRPEGATPFFSGTVTSWDSTTGTLGISPDPNGIVEAGDVLAVRFKADASNSANPTTITDSGCISTTFPTGMTPGAHVGNLIRVIQGASRGTPPRKIVANTATSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLVAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQPLYLNRPVTVGDVKAYVQAAPTGSGLTFTIYVGGTTWLTLTIPAGQTAVVATPSQISTLTQIPANTSVSIGIAAVGTTFPGANLSVFIYS
Ga0268357_136457Ga0268357_1364571F041367VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGG
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