NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028582

3300028582: Sewage microbial communities from Oakland, California, United States - Biofuel 11 (Illumina Assembly)



Overview

Basic Information
IMG/M Taxon OID3300028582 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0134355 | Gp0307529 | Ga0268360
Sample NameSewage microbial communities from Oakland, California, United States - Biofuel 11 (Illumina Assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size260064811
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum lacunae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSewage Microbial Communities From Oakland, California, United States
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Sewage → Sewage Microbial Communities From Oakland, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)37.82Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004177Metagenome / Metatranscriptome449Y
F030458Metagenome185Y
F031889Metagenome / Metatranscriptome181Y
F041367Metagenome / Metatranscriptome160Y
F083634Metagenome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0268360_1000003All Organisms → cellular organisms → Bacteria → Acidobacteria785206Open in IMG/M
Ga0268360_1000005All Organisms → cellular organisms → Bacteria → Acidobacteria727323Open in IMG/M
Ga0268360_1013831All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia2210Open in IMG/M
Ga0268360_1016454All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum lacunae1841Open in IMG/M
Ga0268360_1065342Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0268360_1000003Ga0268360_1000003634F004177MSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQRLYLNRPVTVGDVKGYVQAAPTGSGLTFTIYVGGTVWLTLTIPAGQTAVVATPSQISTLTQIPANTAVSIGISAVGTTFPGASLSVFIYS
Ga0268360_1000005Ga0268360_1000005257F030458MPFQARITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA
Ga0268360_1000005Ga0268360_1000005258F041367VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGGSPLCA
Ga0268360_1000005Ga0268360_1000005259F031889MYGDIPAAGITIRVPNPPKTAQLRLPTNEEMLERLDQQRSIRRTIGRRKSQTEFVPNLKADLDLFSKIRLDEDGAEFDEFEAGNAISKLSFCEVTDCQRAGDEYRVTLRTPFGETVHMVKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIEPAVDLYDSVVTKIEGYAASIKPADVPPHHKSAVVVELVQAIDDLDPALDPNS
Ga0268360_1013831Ga0268360_10138312F083634MYIMLKMADQIISLDRIKINGRVCRLARKLIVTVEHEDDRLTLSNEEFGLVVSAETLEEGIAGISEELAVLWEVYVDEDPANLTADALRLRSNLTSLVPAGASL
Ga0268360_1016454Ga0268360_10164543F083634MYIMLKMADQTISLDRIKINGRVCRLARKLIVTVEHENDRLTLSNKEFGLVVSAETLEEGITGLSEELASLWEVYVDADPANLTADALRLRSNLTSLVPA
Ga0268360_1065342Ga0268360_10653421F083634MYIMLKMADQIISLDRIRIGGRVCRLARKLIVTVEHEDDRLTLSNEEFGLVVSAETLEEGIVGLSEELASLWEVYVGADPANLTADALRLRSNLTSLVPAGVSP
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