NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028749

3300028749: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028749 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321336 | Ga0307349
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size28661689
Sequencing Scaffolds15
Novel Protein Genes19
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon1
Not Available5
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015738Metagenome / Metatranscriptome252Y
F017318Metagenome / Metatranscriptome241Y
F035532Metagenome / Metatranscriptome172N
F037746Metagenome / Metatranscriptome167N
F054063Metagenome / Metatranscriptome140N
F062800Metagenome / Metatranscriptome130N
F068879Metagenome / Metatranscriptome124N
F070165Metagenome / Metatranscriptome123N
F074119Metagenome / Metatranscriptome120N
F092294Metagenome / Metatranscriptome107N
F095527Metagenome / Metatranscriptome105N
F097599Metagenome / Metatranscriptome104N
F098758Metagenome / Metatranscriptome103N
F103316Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307349_100213All Organisms → cellular organisms → Archaea → Euryarchaeota5365Open in IMG/M
Ga0307349_100491All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon3719Open in IMG/M
Ga0307349_102672All Organisms → cellular organisms → Archaea → Euryarchaeota1578Open in IMG/M
Ga0307349_103011All Organisms → cellular organisms → Archaea → Euryarchaeota1473Open in IMG/M
Ga0307349_104498All Organisms → cellular organisms → Archaea → Euryarchaeota1176Open in IMG/M
Ga0307349_105927Not Available1001Open in IMG/M
Ga0307349_105955Not Available999Open in IMG/M
Ga0307349_107249Not Available888Open in IMG/M
Ga0307349_107398All Organisms → cellular organisms → Archaea → Euryarchaeota877Open in IMG/M
Ga0307349_108814Not Available788Open in IMG/M
Ga0307349_109574Not Available748Open in IMG/M
Ga0307349_110501All Organisms → Viruses → environmental samples → uncultured virus704Open in IMG/M
Ga0307349_116424All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon531Open in IMG/M
Ga0307349_116477All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes530Open in IMG/M
Ga0307349_117558All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307349_100213Ga0307349_1002131F095527KMSKATRISMLILIPALLLTTIPVSILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL
Ga0307349_100491Ga0307349_1004917F037746MPVDVEWAKANDTVGQEFESNYIPGTTDKDLEDARGLMEKLLKKYGSRDVLEADERDWAKYKRAMYVVASRSKDAMEAANKAREGLIKRKNLLSKFWEENPDVLFGLSEWQRINLRKYTDLGLLIDQEYLWDLLDELGKEDTIKHLANVANYIYNDTGFMGGVREDYNALEKGPVRSIYHRPTCKSHKTASPSCCKKE
Ga0307349_100491Ga0307349_1004919F074119SEIQVFEVLAKILPYLVSLGIGAFAGWELVKTKIHELAEFFKTVDEALYDDAVTEKEFRAIWEKGRALFQWSFAEKKGEL
Ga0307349_100972Ga0307349_1009724F035532LANIERIFAAYNGLTVVKTWSRPTKLTTAVESPEVNIDLIAASVDSVSLSQPHKKTSFYVRFTIFEEQTTSTSQMDTIYQGIIGAVAANPTLKDSNNAATCDYFGTFNGREISWDLAATERNGISVNAMKIDVPCEVRDT
Ga0307349_101986Ga0307349_1019864F035532LANIERIFAAYNGLTVVKTWSRPTKLTTAVESPEINIDYVVASVDSVSLSQPHKKISFYVRFTIFEEQTTSSSQMDTLYQGILGAVAANPTLEDINKVATCDYFGTFNGREISWDFVATERNGISVNAMKIDVPCEVRDT
Ga0307349_102672Ga0307349_1026722F098758MDNRKALLLGVFFLISILILFSGCNISKEESSPISPKDLCDNIECPNVCKGEDLWNQKCLDGNCVDFVRIESCSEKCGCIVDLCQRVKCSDQCRNEDLWTYKCVDGLCTPDIIKEKCSVQCGCAPKFFYKLIPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEP
Ga0307349_103011Ga0307349_1030111F054063MNAWLYGVESTSNLFFERPKLFYRKWGTLAIHPFIESWGELGMEFQKGLSPYNTVKMFIDALVAAHFFNPDDFEFGGDDNNFTFKAIKCPYKSHCKKLVDSKNEIACLRAITLLGSLDYNVEGESLKYKYNFDFNENAPCNVVFERFKD
Ga0307349_104498Ga0307349_1044982F098758AIFTVITLIWILILSSGCNKPNEEKPPVINKDLCDNIECPNVCKGEDLWSQKCLDGNCVDFVRVESCSEKCGCIVDLCQRIKCSDQCRNEDLWTYKCVDGLCTPDTIKEKCSIQCGCAPKFFYKLNPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEPMKGYELKFDKSGTYMIGVSDQYYIEVGFLGDK
Ga0307349_105927Ga0307349_1059271F062800QLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV
Ga0307349_105955Ga0307349_1059552F070165MTASLTSRLTTKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDINVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307349_107249Ga0307349_1072491F103316AMHRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNKTLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0307349_107398Ga0307349_1073982F054063SKVNLMDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIGPFIESWKDLDMEFQKGLSPYNTAKMFIEALVKAEFFNSADFEMAGDDNNFTFKAINCPYKSHCSRLIDEGKEIACLRAITFLGAMEFNKEGESLKYMYKFEFNKETPCLVSFEKFKD
Ga0307349_108222Ga0307349_1082222F097599VFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQKAEGAGVAGGSGDAESTEEQKFANMAAEVAKATGIQFV
Ga0307349_108814Ga0307349_1088141F062800MTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307349_109574Ga0307349_1095741F070165MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307349_110501Ga0307349_1105011F017318MRSPTAASPLKFQRTVEGAFDINCDGINPSLGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK
Ga0307349_116424Ga0307349_1164241F015738ELEDAIGEVFPGESDRVRLAAVEAWGVVMNRVPESGLEGCAWCLHFDRPIDHRLVKEDRPACIEERNGCAGCPESTYRVRRLPDR
Ga0307349_116477Ga0307349_1164771F068879PNRPVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPHGVTVFANARINKTTS
Ga0307349_117558Ga0307349_1175581F092294NLHDVTLQRLDVYHRNNGGYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPQFKDVITRTLPAKFRTVGSVSAAHLTETGEKVLKGAIVFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGAMFHNLQEPDMPDD
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