NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028756

3300028756: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028756 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0116197 | Gp0321328 | Ga0307341
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size49940936
Sequencing Scaffolds30
Novel Protein Genes35
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available16
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0032
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin0161
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin2171
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0383
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin0621
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA1041
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004383Metagenome / Metatranscriptome440Y
F017318Metagenome / Metatranscriptome241Y
F020914Metagenome / Metatranscriptome221N
F021795Metagenome / Metatranscriptome217Y
F022205Metatranscriptome215Y
F025291Metagenome / Metatranscriptome202N
F028541Metagenome / Metatranscriptome191Y
F035785Metagenome / Metatranscriptome171Y
F036251Metagenome / Metatranscriptome170Y
F040648Metagenome / Metatranscriptome161Y
F047076Metagenome / Metatranscriptome150N
F050405Metagenome / Metatranscriptome145N
F051235Metagenome / Metatranscriptome144Y
F051952Metatranscriptome143N
F062800Metagenome / Metatranscriptome130N
F064748Metagenome / Metatranscriptome128Y
F067770Metagenome / Metatranscriptome125N
F067893Metagenome / Metatranscriptome125Y
F070158Metagenome / Metatranscriptome123N
F070165Metagenome / Metatranscriptome123N
F070166Metatranscriptome123N
F070167Metagenome / Metatranscriptome123N
F077342Metagenome / Metatranscriptome117N
F080087Metagenome / Metatranscriptome115N
F080199Metagenome / Metatranscriptome115N
F088950Metagenome / Metatranscriptome109N
F093911Metagenome / Metatranscriptome106N
F094051Metagenome / Metatranscriptome106N
F095523Metagenome / Metatranscriptome105N
F097599Metagenome / Metatranscriptome104N
F103196Metagenome / Metatranscriptome101N
F103316Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307341_100937Not Available3046Open in IMG/M
Ga0307341_103459All Organisms → Viruses → Predicted Viral1737Open in IMG/M
Ga0307341_106138All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031322Open in IMG/M
Ga0307341_107263All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031215Open in IMG/M
Ga0307341_107999All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091153Open in IMG/M
Ga0307341_108442Not Available1120Open in IMG/M
Ga0307341_108572All Organisms → cellular organisms → Archaea → Euryarchaeota1110Open in IMG/M
Ga0307341_109739All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin0161036Open in IMG/M
Ga0307341_110456Not Available997Open in IMG/M
Ga0307341_110477Not Available996Open in IMG/M
Ga0307341_110757Not Available981Open in IMG/M
Ga0307341_111003Not Available968Open in IMG/M
Ga0307341_113128Not Available874Open in IMG/M
Ga0307341_113151Not Available873Open in IMG/M
Ga0307341_115222All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217801Open in IMG/M
Ga0307341_115809All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038783Open in IMG/M
Ga0307341_116542Not Available760Open in IMG/M
Ga0307341_116601All Organisms → Viruses → environmental samples → uncultured virus759Open in IMG/M
Ga0307341_118011All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062723Open in IMG/M
Ga0307341_118197Not Available719Open in IMG/M
Ga0307341_118325All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104716Open in IMG/M
Ga0307341_118859Not Available703Open in IMG/M
Ga0307341_122436Not Available633Open in IMG/M
Ga0307341_122608Not Available629Open in IMG/M
Ga0307341_122807All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038626Open in IMG/M
Ga0307341_124286All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166602Open in IMG/M
Ga0307341_124520All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038599Open in IMG/M
Ga0307341_128104Not Available552Open in IMG/M
Ga0307341_130171Not Available530Open in IMG/M
Ga0307341_132006Not Available513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307341_100937Ga0307341_1009374F080199MKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSSDMTKEIKDSAPYDTGRYMSSWFYERKESMKYAIISQNSYVPYNTFLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL
Ga0307341_100937Ga0307341_1009375F088950MDIDGVLKELADFIEDKVPELDNKVTTIYPESKRFAPPTVVIDIVAGRETLIVDGTKTHELVRIAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRG
Ga0307341_103459Ga0307341_1034591F064748CFVGNMEDVTPCGNMDADCIAAGCKGKVWGQCHFDPLLNLLSSGAEYFAEILTENVIRDTVFRVEKDGAYSKGGLYPLFSDNGKLWMESGHLKNHFKQRTAYNCETHTPIYLYQEYPEDAEVVEYALVEVKRTPVRKFVEGDV
Ga0307341_106138Ga0307341_1061382F070167MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSQAGLLKLLGLW
Ga0307341_107263Ga0307341_1072632F077342MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANEQERDFIVFSKESIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF
Ga0307341_107999Ga0307341_1079991F095523MGVSIPIEYLYLTVGLLVVAVIYIINDKNNTRLYNPEGPLFVKALKKEIPLLRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLSSPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNATDLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISLAAG
Ga0307341_108442Ga0307341_1084421F103316HRIIGLIAAFAVAFFTLPTLTPNPDHISVETKTQTQVTTQELQESPDQSLNKTLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0307341_108572Ga0307341_1085721F094051MGNTGILGKVQIEGDWTQKRLILPVIQAALERTQLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRFVFGVCNATPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSP
Ga0307341_109739Ga0307341_1097393F050405MITEQEVITICKANYDANLITQGALLVGMRKVREIIGSALYKKVEQIGYEELLEKCKTLAAWSVHALMVDRIATEMTNKGVYQLYTVGANGVQLTELTQIKAAINEITTACANEIKDFIQERVAAHDPLYVNYVTELKTTSKPSLVSNNKRITQV
Ga0307341_110456Ga0307341_1104561F062800MNQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV
Ga0307341_110477Ga0307341_1104772F051952SENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGTEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN
Ga0307341_110757Ga0307341_1107572F067770MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKKANR
Ga0307341_111003Ga0307341_1110031F070165VFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307341_111975Ga0307341_1119752F103196EGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA
Ga0307341_112347Ga0307341_1123471F020914DQILSENQALPNADSGDSTNTIKLDAVADDGLHIVVCAASTTVELASNATLEIRPTIGATDGTVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0307341_113128Ga0307341_1131281F062800TKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307341_113151Ga0307341_1131511F070166MNIDNYVVQIHKRTKRITLQRFLVSKIAYGKDFSLIELAALFHNQLWLQTKCSTDAQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQNMEAQLRNSIFTTWRKSQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTYKEIISRIKRTIQVREAIKRIDPNWRNTQIAEASGGKVIPKKVG
Ga0307341_115222Ga0307341_1152222F093911EITRTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307341_115809Ga0307341_1158092F028541NEQERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKANRAQRKAAQEA
Ga0307341_116542Ga0307341_1165421F036251MSAKERQTVLFGDTGVVAPIDTTERVRLSDGTVFVAQRIEIRPSNIYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGENGALTHDVMCAVKSVLSVNTGRRFFTLV
Ga0307341_116542Ga0307341_1165422F040648VINHEEALLEIEPMLDTAREGVAALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKEALKGATQEQIDRAYAILSGQEAVEDVPGEGDEE
Ga0307341_116601Ga0307341_1166011F017318QNKRAAKRRVSQNKSPLPNISAPIQAKPLKFERTVEDAYNIVCDGINPSIGSFNFSLNDLPSYTEFTGLFDLYRIDEIEIEWYPEYTVLSDGGVTSPAVNVQLNTAIDPAGNTPAAVTDVLQYRTLHATGISKSHKRRFVPAYLMDGISPCKCYISTNSPSSNLWGIAYGVSPTGTAMTFRSRARFFLSLAQSR
Ga0307341_116953Ga0307341_1169532F097599ATRIAGPVTPNHVLVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHANMTEFENLKKELDAEKAKTAELVNLKQEIATLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQKAEGAGVAGGSGDMGSTEEQKFANMAAEVAKATGIQFV
Ga0307341_118011Ga0307341_1180112F080087MQATATVTSASEMEHATAWKTSETEYDVRVPARYREYTCAHRVVAIYRRYGIITDYQYRVSKKELEEIERIVETRIEQTNNKGGHK
Ga0307341_118197Ga0307341_1181971F070165MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMLDLNVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV
Ga0307341_118325Ga0307341_1183251F070158MADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVM
Ga0307341_118859Ga0307341_1188591F067893TMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR
Ga0307341_122436Ga0307341_1224361F047076LTAKAFVQFYNIAFEKISREVRLLTQILKPNNVDQYEDFRKLDIVKIDSVKDTSGDDIYWEVRHRKLLIYDSNKELITNETVGNHKLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVHF
Ga0307341_122608Ga0307341_1226081F022205RIMRNRNKHFLLPYNKFHNATESTSSITTNGFGFPLTRPLRPHAVEVRYAHINPVGIRFRIYAGNGEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA
Ga0307341_122807Ga0307341_1228071F051235QFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKQDRKLVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLRGRVFSVVETVERVTEKHGLQKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMER
Ga0307341_124286Ga0307341_1242862F004383HAGRYPEGAREYAREWVGMTDILERAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYVRLEGSE
Ga0307341_124520Ga0307341_1245201F021795MKKEADRVRRWREKKKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALSSLKRQAYAPPVLRHFPRREEALARAAAAPPAGRVGHDGNRQPRILIDDLANYPSLEDIEREQAAKEQSGICN
Ga0307341_128104Ga0307341_1281041F035785RIEAENALKMTETEMLDVAFEASENSVIELNVVDPDSQAGDNKGVYLEVVKLDDEESVVRDRWPNLDGTRHIVRTKDIAAIYRALVDQVEEVA
Ga0307341_130171Ga0307341_1301711F025291NSSTGLYTLNVGADQRYMSFQTLLTTDEFQNMAIVYNDFRIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRVCADDSARIFAPKALSAQSCEWNLRGIGTNFNIWMDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307341_132006Ga0307341_1320062F022205LPYNKFFTATTGASTVTANVMGLPPNRPCRPHAIEVRYAHSSPAGVRFRIYAGNSEEVYVSPALVAGQAPQVFRATLPANTDFALYDSAATVMDFAGSATWAIRLIMAHKENMA

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