NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029019

3300029019: Human fecal microbial communities from infant at 12 months in Denmark - 341_12M



Overview

Basic Information
IMG/M Taxon OID3300029019 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193648 | Ga0169654
Sample NameHuman fecal microbial communities from infant at 12 months in Denmark - 341_12M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size75123082
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F062845Metagenome130N
F067844Metagenome125N
F084124Metagenome112Y
F092227Metagenome107N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169654_100155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii50958Open in IMG/M
Ga0169654_100193All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii45490Open in IMG/M
Ga0169654_100251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii37477Open in IMG/M
Ga0169654_100260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii36183Open in IMG/M
Ga0169654_100480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii19178Open in IMG/M
Ga0169654_101514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6268Open in IMG/M
Ga0169654_103402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3054Open in IMG/M
Ga0169654_105792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1941Open in IMG/M
Ga0169654_106908All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1680Open in IMG/M
Ga0169654_108004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1483Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169654_100155Ga0169654_10015513F084124LLFGGLNKQAKAFARATKEIHFIFHSQRNALTMFLAFLFIMAVTCFNKLSLNTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0169654_100193Ga0169654_10019311F084124LNATAKAFARATKGNKHHFHSQRNTLTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF
Ga0169654_100251Ga0169654_1002512F092227MNEQKHKRLLRIGCLLLAGVFALSLLGSVLMMLLF
Ga0169654_100260Ga0169654_1002608F062845MEKTPFILHEEFRSDNNEQRKEHFQKKFERYIVDELSNAAPSKSCA
Ga0169654_100480Ga0169654_1004806F084124LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDELLXXXXXXXEDFMGAAQTRNF
Ga0169654_101514Ga0169654_1015141F067844MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVITPQHRSYRVPQGSPQVFGGP
Ga0169654_103402Ga0169654_1034021F026592PQGIAALAAQGGVATLTERSDATFSVKQFSSADRE
Ga0169654_105792Ga0169654_1057922F097172AVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYNKNGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKSVKEGKKYKLEYLYPDTVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNSLGKTTCKPYFTTHGYNEQSCLYNTNYLKAYSFDMNIEYKK
Ga0169654_106908Ga0169654_1069081F026592RTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0169654_108004Ga0169654_1080043F097172MKKNVLKKLMCAVLAATCVATAVVPAMADDVVTAEAATKKVTSVYKYHLEGYDKKGYPVKFSKSSFYKDLNSLPAVKMGKTTINVPAVTASVKSVSKEKGNPRYQSFVKFKAPKTGKYVVTLNNLQGTDDKSLKSLYYDVFKPIKDGGKYTLELIDYDIVGDYTMLYENNYLARLRTILDNYKAEHPEYANVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
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