NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029030

3300029030: Human fecal microbial communities from mother in Denmark - 367_M



Overview

Basic Information
IMG/M Taxon OID3300029030 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193667 | Ga0169673
Sample NameHuman fecal microbial communities from mother in Denmark - 367_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size120591751
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-281
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F047125Metagenome / Metatranscriptome150N
F054110Metagenome140N
F055715Metagenome138N
F067844Metagenome125N
F076064Metagenome118N
F090515Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169673_100930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales14326Open in IMG/M
Ga0169673_101357All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii10319Open in IMG/M
Ga0169673_102962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5197Open in IMG/M
Ga0169673_113310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-281505Open in IMG/M
Ga0169673_117626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1197Open in IMG/M
Ga0169673_135584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis658Open in IMG/M
Ga0169673_140376All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes592Open in IMG/M
Ga0169673_149425Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169673_100930Ga0169673_1009302F055715LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0169673_101357Ga0169673_1013573F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNEAKRPPKPALKFY
Ga0169673_102962Ga0169673_1029621F026592SPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0169673_113310Ga0169673_1133103F026592SPQGIAALAAQGGVATLTERSDATFFVGQFSSADRE
Ga0169673_117626Ga0169673_1176263F067844MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAA
Ga0169673_135584Ga0169673_1355842F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
Ga0169673_140376Ga0169673_1403762F047125MDVALLLMVLGVMLSGFRAADALDYMRKEILRQEGKRRGWWS
Ga0169673_149425Ga0169673_1494251F090515VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALTFTALLCRHIGSIRTFLKS
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