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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029053 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127429 | Gp0193659 | Ga0169665 |
| Sample Name | Human fecal microbial communities from mother in Denmark - 345_M |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 155279970 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 27 |
| Associated Families | 26 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 7 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Denmark | |||||||
| Coordinates | Lat. (o) | 55.678 | Long. (o) | 12.531 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026592 | Metagenome / Metatranscriptome | 197 | Y |
| F042095 | Metagenome | 159 | N |
| F050794 | Metagenome | 145 | N |
| F055715 | Metagenome | 138 | N |
| F056309 | Metagenome | 137 | N |
| F057001 | Metagenome | 137 | Y |
| F058555 | Metagenome | 135 | N |
| F064725 | Metagenome | 128 | N |
| F073656 | Metagenome | 120 | N |
| F075481 | Metagenome | 119 | N |
| F076653 | Metagenome | 118 | N |
| F078005 | Metagenome | 117 | N |
| F078006 | Metagenome | 117 | N |
| F080673 | Metagenome | 115 | N |
| F081453 | Metagenome | 114 | N |
| F083451 | Metagenome | 113 | N |
| F083452 | Metagenome | 113 | N |
| F087334 | Metagenome | 110 | N |
| F087335 | Metagenome | 110 | N |
| F089590 | Metagenome | 109 | N |
| F089591 | Metagenome | 109 | N |
| F089592 | Metagenome | 109 | N |
| F098313 | Metagenome | 104 | N |
| F101356 | Metagenome | 102 | N |
| F102167 | Metagenome | 102 | N |
| F106193 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0169665_100423 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 41969 | Open in IMG/M |
| Ga0169665_100890 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 23668 | Open in IMG/M |
| Ga0169665_101071 | Not Available | 19902 | Open in IMG/M |
| Ga0169665_101376 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 15933 | Open in IMG/M |
| Ga0169665_101385 | Not Available | 15806 | Open in IMG/M |
| Ga0169665_101480 | Not Available | 14960 | Open in IMG/M |
| Ga0169665_101723 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 12857 | Open in IMG/M |
| Ga0169665_102122 | Not Available | 10676 | Open in IMG/M |
| Ga0169665_102285 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 10010 | Open in IMG/M |
| Ga0169665_102730 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 8522 | Open in IMG/M |
| Ga0169665_103586 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 6690 | Open in IMG/M |
| Ga0169665_107107 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 3617 | Open in IMG/M |
| Ga0169665_107201 | Not Available | 3573 | Open in IMG/M |
| Ga0169665_108245 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3173 | Open in IMG/M |
| Ga0169665_108881 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 2964 | Open in IMG/M |
| Ga0169665_109313 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 2832 | Open in IMG/M |
| Ga0169665_111418 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 2319 | Open in IMG/M |
| Ga0169665_124461 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1046 | Open in IMG/M |
| Ga0169665_125078 | Not Available | 1017 | Open in IMG/M |
| Ga0169665_130514 | Not Available | 818 | Open in IMG/M |
| Ga0169665_133248 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 741 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0169665_100423 | Ga0169665_10042351 | F081453 | MSPFFLWIGENIVEKYISANPVCGTNIQPPEPAVKGAPGRKCIQ |
| Ga0169665_100890 | Ga0169665_10089019 | F055715 | LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNERFCDKINELIQVGTAKILDN |
| Ga0169665_101071 | Ga0169665_1010715 | F050794 | VIAPVGTLYIMQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKLMMRDLLNELKGDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN |
| Ga0169665_101376 | Ga0169665_10137613 | F083451 | MNVNLINKINNFSNVDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDCLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDVFSKEAEMVNETDRDKIEEFNKSLAHE |
| Ga0169665_101376 | Ga0169665_10137622 | F076653 | MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIEISSVLQTLVRLVENAKLIFDDQPGIHDMTMYNGFFLRDDFQSGKDYSLNLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFERMGVKMKYNAYYCYAATSGIWYDNGFKERLAKRFNKSLGGDGDLFGANLACMVCDRRDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK |
| Ga0169665_101385 | Ga0169665_10138510 | F089590 | MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVLKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS |
| Ga0169665_101385 | Ga0169665_10138511 | F075481 | MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK |
| Ga0169665_101385 | Ga0169665_1013858 | F042095 | MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNSYNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCNIYYANIQICKMTAFPIVDIPGLEFLIVSHTKYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIEASGIRNIKNMKKIEDLNLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDLNTIPSFEVDKINPIITTFGFLEDWMASGRRTGWNDDNMFGRGLEYLTGFSAFSCSSLRMDKLPDYIYEMRAITWFNVNASTHNQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA |
| Ga0169665_101480 | Ga0169665_10148012 | F089592 | MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAAIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYXXXXXVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTNKVKDVKKKEDVEEGDKVNTEE |
| Ga0169665_101480 | Ga0169665_10148013 | F089591 | MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVIWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK |
| Ga0169665_101723 | Ga0169665_10172314 | F087335 | MIELYFNDANLLPENREEEQYAEAVLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLSEAGEPELLIRCVTEESVETVYQRVANYD |
| Ga0169665_102122 | Ga0169665_1021225 | F098313 | MREMEFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD |
| Ga0169665_102285 | Ga0169665_10228514 | F073656 | MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH |
| Ga0169665_102730 | Ga0169665_10273012 | F102167 | MDINQIKTYLPSGWDVVDLIDHGIIDLDIINGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK |
| Ga0169665_102730 | Ga0169665_10273015 | F083452 | MSGRIKIKPKNKDKKPNIDVFKIIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIN |
| Ga0169665_103586 | Ga0169665_1035863 | F078005 | MKKDKFVKELEKIIDRVKAEDDGFEYGGKVVFYKEDDDSYEIWAKNIEMDMMVEANAMASMDDKTFACLMGEVYKQKFTKAIMMSEDEDDEDN |
| Ga0169665_105865 | Ga0169665_1058652 | F101356 | LDEKLQTDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ |
| Ga0169665_107107 | Ga0169665_1071071 | F056309 | TPSLSVVPLFLGASDSLSVSYGMEPEQEALSTVSFKD |
| Ga0169665_107201 | Ga0169665_1072016 | F064725 | VRVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKMV |
| Ga0169665_108245 | Ga0169665_1082451 | F026592 | RTVCQNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE |
| Ga0169665_108881 | Ga0169665_1088813 | F106193 | VGCNTCKEKALKAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP |
| Ga0169665_109313 | Ga0169665_1093135 | F057001 | MISKDINKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGIDKRIVKCAVPIKRYTFSLIAKCVTYYLTHPKNDR |
| Ga0169665_111418 | Ga0169665_1114183 | F056309 | SLSVVPLLLGDFDSLSVSYGMEPEQEALSIVSFKD |
| Ga0169665_124461 | Ga0169665_1244613 | F078006 | MDNVLKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI |
| Ga0169665_125078 | Ga0169665_1250781 | F058555 | NKTMETKIVLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRNRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKNRSVYKCLDKNLSSNERRNMANKSRKFDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDV |
| Ga0169665_130514 | Ga0169665_1305142 | F087334 | MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHLKDFFLYRAAALFEYREKHQ |
| Ga0169665_133248 | Ga0169665_1332482 | F080673 | MKLQDEALLYLRDNITKDEAYYILTTDKDIIEILIADKKDGSKRIKILDTEYTVEKDDMLLLFDTDGIIDECLLVATYIGVNMYFRMQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |