NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029109

3300029109: Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002637-96



Overview

Basic Information
IMG/M Taxon OID3300029109 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0193288 | Ga0168978
Sample NameHuman oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002637-96
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size94168894
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Unclassified → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F051211Metagenome144N
F063778Metagenome129Y
F092231Metagenome107Y
F095630Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168978_100015All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis150044Open in IMG/M
Ga0168978_100404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces26845Open in IMG/M
Ga0168978_100744All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria16340Open in IMG/M
Ga0168978_101467All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica9500Open in IMG/M
Ga0168978_102409All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria6203Open in IMG/M
Ga0168978_104018All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis3984Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168978_100015Ga0168978_10001596F051211MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEYILKIRRQQYERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
Ga0168978_100404Ga0168978_10040412F063778MPETISEEAKQELLQQLQDALGLVKNADTSAHDVAAITHSVADGHQLTEVMLQQMAGVKGYLENCRASINDAIGNIEAIPLDPPPKD
Ga0168978_100744Ga0168978_10074416F095630MRYSPLYKTSKDNGLIAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQVFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
Ga0168978_101467Ga0168978_1014678F092231MIIFAPQEFITWSNTLIQFPWPIQVDDFASYAERLGWTPTPRPTWFNVYANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAVELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGDMFAQVISGRWSVLFDFFTPEGRRQFL
Ga0168978_102409Ga0168978_1024091F051211MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
Ga0168978_104018Ga0168978_1040183F033081MYPPDLMVVHRPRKGIMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATGCGVYDTLLLFALMEEQAFRSGGEKWSWRERVRASVCFGLAHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYHSQIVATAAATTIHALYNVIALSLIAVVAVIYMAISICS
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