NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029174

3300029174: Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1



Overview

Basic Information
IMG/M Taxon OID3300029174 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127413 | Gp0192415 | Ga0168029
Sample NameAquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1
Sequencing StatusPermanent Draft
Sequencing CenterMichigan State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29749109
Sequencing Scaffolds22
Novel Protein Genes22
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available8
All Organisms → Viruses → Predicted Viral5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_51
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquariaum Water Viral Communities From Chicago, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: Chicago
CoordinatesLat. (o)41.87Long. (o)-87.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001484Metagenome / Metatranscriptome686Y
F008183Metagenome / Metatranscriptome337Y
F014122Metagenome / Metatranscriptome265Y
F024268Metagenome / Metatranscriptome206Y
F028485Metagenome / Metatranscriptome191Y
F031688Metagenome / Metatranscriptome182Y
F042051Metagenome / Metatranscriptome159Y
F045186Metagenome / Metatranscriptome153Y
F052619Metagenome / Metatranscriptome142Y
F053563Metagenome / Metatranscriptome141N
F062887Metagenome / Metatranscriptome130Y
F063690Metagenome / Metatranscriptome129Y
F078200Metagenome / Metatranscriptome116Y
F079968Metagenome / Metatranscriptome115Y
F085584Metagenome111Y
F086799Metagenome / Metatranscriptome110Y
F086975Metagenome / Metatranscriptome110Y
F091439Metagenome / Metatranscriptome107Y
F091908Metagenome / Metatranscriptome107Y
F104784Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168029_100009All Organisms → cellular organisms → Bacteria34952Open in IMG/M
Ga0168029_100034All Organisms → cellular organisms → Bacteria → Proteobacteria17357Open in IMG/M
Ga0168029_100145Not Available7955Open in IMG/M
Ga0168029_100177All Organisms → cellular organisms → Bacteria7211Open in IMG/M
Ga0168029_100603All Organisms → Viruses → Predicted Viral3669Open in IMG/M
Ga0168029_100634All Organisms → Viruses → Predicted Viral3527Open in IMG/M
Ga0168029_100848All Organisms → Viruses → Predicted Viral2972Open in IMG/M
Ga0168029_101057All Organisms → Viruses → Predicted Viral2600Open in IMG/M
Ga0168029_102107Not Available1707Open in IMG/M
Ga0168029_102774All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_51441Open in IMG/M
Ga0168029_103205Not Available1321Open in IMG/M
Ga0168029_103242Not Available1311Open in IMG/M
Ga0168029_103958All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium1163Open in IMG/M
Ga0168029_104065All Organisms → Viruses → Predicted Viral1144Open in IMG/M
Ga0168029_104610Not Available1062Open in IMG/M
Ga0168029_107609All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage808Open in IMG/M
Ga0168029_108988Not Available747Open in IMG/M
Ga0168029_109196Not Available740Open in IMG/M
Ga0168029_112214All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage656Open in IMG/M
Ga0168029_113811All Organisms → cellular organisms → Bacteria620Open in IMG/M
Ga0168029_115250Not Available590Open in IMG/M
Ga0168029_115866All Organisms → Viruses577Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168029_100009Ga0168029_10000923F086799MKVTKVAYSRLVSKGNYENAKIEIEAEVEQGDLARDVYEKIKEWVDKRVEIEKMSDAAIMRARRVMEDKRHHTLAQIEEAEELLKKCGPDDSLPF
Ga0168029_100034Ga0168029_10003417F014122MSFLAARNAVAIGLGGIVSLFGGRASEVAQSNLLTESGDNLVQEDGGLILLE
Ga0168029_100145Ga0168029_1001452F008183MAFENAEIDPVKYGVLWQKVQDMDKKVDKMERQLEQLLELANKGKGGLWFGMTVASAVSGFVGFVISHWKGN
Ga0168029_100177Ga0168029_1001776F014122MSFLAARNAIGIGLGGILSLFGGRGSDQAVGNLLCENGDNLVQEDGGLILLE
Ga0168029_100603Ga0168029_1006033F104784MIPINKSAYLTVRVADKTRTKFHAKARKFGTPSEVLRELIDAFIEDRVTINPPVTGNPKEKLYVPRSQD
Ga0168029_100634Ga0168029_1006341F091439MRAVLSPDDLKRGDLAEVGWHPAEIIDYDEKPADTDQSTNCIFKLKLIDGPNKGVVCQKLFNEKALGFGKNLWKTLQFPYDPVKGYELTTELFKQTIGSKLKVYIKRGKSNKGNEFNDVTDFMPLG
Ga0168029_100848Ga0168029_1008484F079968MIGTIFRKHIERYEAGTSGGSLYQAWKVVADLGQGIYSCVRVDNTQDPMGAASPIKRTFKEADIKKYLQNNR
Ga0168029_101057Ga0168029_1010574F085584MKKPLILSLEDENTSLFSKQYLSIPDLHEEIEKRLEDLKTMDKRKKKQLMQAKEDVNFLIDMYNAKAKFKTYNKVK
Ga0168029_102107Ga0168029_1021072F024268MTELYSGTEAVSTTEHSLTTDTAGPDADTTPGVFQLFLDLSDMVAGDQLQIRLYEKVRSGDTQRVVEEWILTGPQSKPNFTLPAFALMHGWDFTLDALAGTITVNWSIRQIG
Ga0168029_102774Ga0168029_1027742F045186MASGKSGGGGKFMDNAVGMCSYKKNPMSAASRVAPMCGPGANPDQRKANKLLQKAHRDWDSQRGQSGM
Ga0168029_103205Ga0168029_1032053F078200MAAVYANSSNQIAALKELYTDDKEYMKDLVYKENPFLALVPKNESPDGFAGKR
Ga0168029_103242Ga0168029_1032421F031688MKTYIVYVNGFEAGTIKAGSHNAAEKKAKAKHPGKDVSVAYTEV
Ga0168029_103958Ga0168029_1039582F091908MAKSLNECPKVVTKPGGRVGGTNAAPKVVTNPTRYTGGMNKAACDVPKKRK
Ga0168029_104065Ga0168029_1040653F086975MLSPRLTSCPECASIPALIADIDCKLASLANNLYNNVVFMLNQPVPGGVMLALINYRRILAYKYCNPDYAAPFTVNMIAS
Ga0168029_104610Ga0168029_1046101F053563FPSHDQKRLSTEGQNVVDNRFWGSDPSILNKQIKKAKEISGQVEDPKTGEILEEGAPVYGVYFNAAGDNVNFSTMVSDVTLNMLPNMKITKKAAKQFDEKLRERIPDWPGLNNLEASDIDAVRTYFRGPNRGEARKAFSEEMAKPRSMKLGFPDQASVRAAVSKADMLGMGSGDAAGRMIAQIDYNAPVDPVSMHTTYPAGLKRVEGTPVYRMADESGNFRDVPTSMFFNDFYNDRIIDGVVPPEATTIRSMELRQATQPATRELSDIINEYLYQTDDTRRGYPYNR
Ga0168029_107609Ga0168029_1076091F028485GVLASFPEGYLYGTLQCYYDKNKNVEEAQKWQVRFDDAYGLIEDQNYRGRWRGGDQHLTSEFQPRDYRYSFK
Ga0168029_108988Ga0168029_1089881F063690KLLKSAPRMRNTLPQNITRGNGVKNPQKASAYVGKGVLKNGDTITAIKGSITPVPNGPLIKKKGPFKGSTLKKGGAIVKVGGQTHKVFKNKKGDVIVDHTAGIPAGKWDKINLTKKAKAKTVKQGVASVRKWHRENPNYYKKKK
Ga0168029_109196Ga0168029_1091961F078200MATFATASNQVAALKELYDNPSNYLKDLVYKKNPLLALISKNESPSGMAGKYLP
Ga0168029_112214Ga0168029_1122141F042051MTTFGEVSWNDDLEGFNNKKTNSKDLFLKLDEGSNEVRLITQPFQYLVHKYKKDESDKYGQKVSCSAVHGSCPLCAMGDKAKPRWLLGVISRKTGTYKILDISFAVFSQVRKLARNTQRWGDPTKYDIDIVVDKQGGATGYYSVQPVSKEPLSAEDQKIKDNADLDDLKRRVTPPDRDWE
Ga0168029_113811Ga0168029_1138111F001484LATLRGSGVITQWDVENKQIQVTPAISGAVTGDKLVVNGISSPASLPALYGVPYHHSNASAGTWLGFSRSNTPEIRANRVNAASSGLALTFARLAMNKVGNRVGIDNTFKPRAWTHPCQQQAYEEIGQLVSIIQKMPKEESLNMYFGDGMQLAGAALTPSFNWNQTRIDFVVDEVWGRGEILPVGFYTTDGRRIFEIRGPSGGVAT
Ga0168029_115250Ga0168029_1152503F062887MPVRKTSGGYKYGNKGKLYKGKGAKAKATKQGRAIRASQAKKK
Ga0168029_115866Ga0168029_1158661F052619FPSHDQARYDFSTDGINPTLVAFVFTLDQLPDYTDFTRLFDMYKIQKIEIQWNPEYTELTDAALVSNAVNVYVNSVVDLTDASSPSSVDELLQSQQLQQTSVTKVHSRKWQPTFLMAGLVPCSCWLPTSSPSERHYCVKVAVPPTGVAMTFRSRAKFSLEFANVN
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