Sample 3300029188

Overview

Basic Information
IMG/M Taxon OID	3300029188 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193505 \| Ga0169196
Sample Name	Human fecal microbial communities from infant at 12 months in Denmark - 133_12M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	107666727
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.676097	Long. (^o)	12.568337	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F081453	Metagenome	114	N
F089053	Metagenome	109	Y
F099451	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F081453

Metagenome

114

F089053

Metagenome

109

F099451

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169196_100043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	158105	Open in IMG/M
Ga0169196_100202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	70888	Open in IMG/M
Ga0169196_100655	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	30913	Open in IMG/M
Ga0169196_102184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9515	Open in IMG/M
Ga0169196_105732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2682	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169196_100043

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

158105

Open in IMG/M

Ga0169196_100202

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

70888

Open in IMG/M

Ga0169196_100655

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides

30913

Open in IMG/M

Ga0169196_102184

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

9515

Open in IMG/M

Ga0169196_105732

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2682

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169196_100043	Ga0169196_10004379	F081453	MYPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ
Ga0169196_100202	Ga0169196_10020253	F089053	MEGARPDKFAFSVKLERVVDGCRPIKGCIRKWIYGSANGQPELSTAKEANVKNVEVSL
Ga0169196_100655	Ga0169196_10065534	F099451	MERRFNMEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE
Ga0169196_102184	Ga0169196_10218413	F026489	LRADSTKNNLLHVKVGKVVVARGCSLLTPKENQKSASDFDALDPRKRGCSPLLTPKKWATPKKTEDSRLFGVKIF
Ga0169196_105732	Ga0169196_1057322	F026489	VASFADEKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF

Scaffold ID

Protein ID

Family

Sequence

Ga0169196_100043

Ga0169196_10004379

F081453

MYPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ

Ga0169196_100202

Ga0169196_10020253

F089053

MEGARPDKFAFSVKLERVVDGCRPIKGCIRKWIYGSANGQPELSTAKEANVKNVEVSL

Ga0169196_100655

Ga0169196_10065534

F099451

MERRFNMEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE

Ga0169196_102184

Ga0169196_10218413

F026489

LRADSTKNNLLHVKVGKVVVARGCSLLTPKENQKSASDFDALDPRKRGCSPLLTPKKWATPKKTEDSRLFGVKIF

Ga0169196_105732

Ga0169196_1057322

F026489

VASFADEKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029188: Human fecal microbial communities from infant at 12 months in Denmark - 133_12M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences