NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029198

3300029198: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012067-35



Overview

Basic Information
IMG/M Taxon OID3300029198 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192988 | Ga0168723
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012067-35
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size118227023
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062845Metagenome130N
F067845Metagenome125N
F084124Metagenome112Y
F087335Metagenome110N
F087336Metagenome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168723_100044All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii230460Open in IMG/M
Ga0168723_100447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii46308Open in IMG/M
Ga0168723_100489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes41121Open in IMG/M
Ga0168723_101609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii7242Open in IMG/M
Ga0168723_104414All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2652Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168723_100044Ga0168723_100044151F084124LNITALAFARATKENTLPFYGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPDKLLYRKILWALPKPASL
Ga0168723_100447Ga0168723_10044716F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNDFLLWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0168723_100489Ga0168723_10048927F087335MLELYFNGGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVEEVYQWVSNYDFDEPCAGNVPS
Ga0168723_101609Ga0168723_1016093F062845MKKTPFILHEKFRSDNNEQRKGDFQKEFERYIIDGLLNAVPSRACT
Ga0168723_104414Ga0168723_1044143F087336VAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHIRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
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