NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029253

3300029253: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011692-133



Overview

Basic Information
IMG/M Taxon OID3300029253 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192964 | Ga0168699
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011692-133
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size210907962
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F044554Metagenome154N
F047126Metagenome150N
F056309Metagenome137N
F056682Metagenome137Y
F070093Metagenome123N
F074899Metagenome / Metatranscriptome119N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168699_1000188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae91308Open in IMG/M
Ga0168699_1001135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae19741Open in IMG/M
Ga0168699_1002237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae10797Open in IMG/M
Ga0168699_1003098All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena8329Open in IMG/M
Ga0168699_1003699All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii7207Open in IMG/M
Ga0168699_1004172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena6552Open in IMG/M
Ga0168699_1019847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581813Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168699_1000188Ga0168699_100018833F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168699_1001135Ga0168699_10011357F044554VLAGRFIPVLCASIARLFPCRTEIARYLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168699_1002237Ga0168699_10022377F056682MKMQSRAGKVANQSVGQSEMYPASFWAFLSKNRSTFSFQELGKIQENQEVL
Ga0168699_1003098Ga0168699_100309810F056309PSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFMD
Ga0168699_1003699Ga0168699_100369911F026489NQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0168699_1004172Ga0168699_10041721F070093PFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNFMEANQ
Ga0168699_1019847Ga0168699_10198473F074899MSGRKQWNKQAATSSFLDKKTPQSLIQQGMEGSTVVGKDEVGSSNLPSSSNINRLNRLI
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