NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029316

3300029316: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029316 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133095 | Gp0281884 | Ga0242768
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size194053279
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:431

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059106Metagenome134N
F062845Metagenome130N
F067720Metagenome125Y
F078693Metagenome116N
F081453Metagenome114N
F090515Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242768_100142All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques107144Open in IMG/M
Ga0242768_100175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis98818Open in IMG/M
Ga0242768_100410All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes59615Open in IMG/M
Ga0242768_101176All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii27790Open in IMG/M
Ga0242768_101333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales24758Open in IMG/M
Ga0242768_102289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii14194Open in IMG/M
Ga0242768_104384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6522Open in IMG/M
Ga0242768_138037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:43652Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242768_100142Ga0242768_100142101F059106MHASVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0242768_100175Ga0242768_1001751F081453KEMSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0242768_100410Ga0242768_100410102F067720MSSTAYEHFVGANKMYAIQRRFRDFTKTFCDFVKVNKIDHLGNVTVMVRNAGQLPQPFWLGSACGGGSCGAARCAARA
Ga0242768_101176Ga0242768_10117614F062845VTHITTRWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACA
Ga0242768_101333Ga0242768_10133324F090515VITCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0242768_102289Ga0242768_1022892F078693MVLAPVRGAERSFVKADCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVEVEKC
Ga0242768_104384Ga0242768_1043843F067720MASTTYRHIGDLTDMFAVQEQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGVACGGGSRSAARCAART
Ga0242768_138037Ga0242768_1380372F059106IRVILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVNA
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