NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029337

3300029337: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5



Overview

Basic Information
IMG/M Taxon OID3300029337 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133112 | Gp0282459 | Ga0243320
Sample NameHuman fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5
Sequencing StatusPermanent Draft
Sequencing CenterZhejiang University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size220038957
Sequencing Scaffolds10
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F047125Metagenome / Metatranscriptome150N
F047126Metagenome150N
F052660Metagenome142N
F055775Metagenome138N
F062845Metagenome130N
F064817Metagenome128N
F067845Metagenome125N
F074899Metagenome / Metatranscriptome119N
F101357Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243320_1000380All Organisms → cellular organisms → Bacteria68370Open in IMG/M
Ga0243320_1000831Not Available34125Open in IMG/M
Ga0243320_1001454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18891Open in IMG/M
Ga0243320_1001555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia17522Open in IMG/M
Ga0243320_1003571All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1586781Open in IMG/M
Ga0243320_1010080All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2515Open in IMG/M
Ga0243320_1016881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1634Open in IMG/M
Ga0243320_1017631All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1577Open in IMG/M
Ga0243320_1018928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1486Open in IMG/M
Ga0243320_1022018All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741313Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243320_1000380Ga0243320_100038016F032312MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNGDALVCLGFTWFKLLGVALMMLLYPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243320_1000380Ga0243320_10003803F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLSHSLTYILDQTKEEGRRICIQNIIERNINQENQDENETI
Ga0243320_1000380Ga0243320_10003807F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0243320_1000380Ga0243320_10003809F044555MKTTNPSSRITLSQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPMVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPGDLVSLS
Ga0243320_1000831Ga0243320_100083130F055775MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARIVSWLVDTTGDSPKYTIDIINANSGAVAAIALN
Ga0243320_1001454Ga0243320_100145417F052660MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS
Ga0243320_1001555Ga0243320_100155518F074899MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSNINRLNRKI
Ga0243320_1003571Ga0243320_10035719F074899MSGRKQWNKQAATLSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVS
Ga0243320_1010080Ga0243320_10100803F047125MDVVLLLIVLGVMLSGFWAADALDHIRREILRQEGKRRGWWS
Ga0243320_1016881Ga0243320_10168812F062845MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRAYT
Ga0243320_1017631Ga0243320_10176312F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLRVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0243320_1018928Ga0243320_10189281F026489ENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF
Ga0243320_1022018Ga0243320_10220184F047126LFPKVYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIAYFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
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