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Sample 3300029356
3300029356: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029356 Open in IMG/M GOLD Reference Gs0133117 | Gp0282958 | Ga0243797 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 199074257 Sequencing Scaffolds 4 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 2 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243797_100129 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 156275 Open in IMG/M Ga0243797_101533 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 22488 Open in IMG/M Ga0243797_109422 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 2235 Open in IMG/M Ga0243797_112679 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens 1620 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243797_100129 Ga0243797_1001291 F070093 AEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN Ga0243797_101533 Ga0243797_1015331 F056309 GTKRTCLRRTPSLSVVSLLLGGSDSLSVSYGMEPEQEALSIVSFKD Ga0243797_109422 Ga0243797_1094224 F026592 CQNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE Ga0243797_112679 Ga0243797_1126793 F029444 MEVSGQLTGFELEDLMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF Ga0243797_120282 Ga0243797_1202822 F101356 MDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSDSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
