NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029385

3300029385: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_3_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029385 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283146 | Ga0243985
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_3_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size247692059
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F044554Metagenome154N
F059106Metagenome134N
F067844Metagenome125N
F070093Metagenome123N
F084124Metagenome112Y
F090515Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243985_1000071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus192128Open in IMG/M
Ga0243985_1003806All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii9350Open in IMG/M
Ga0243985_1003809All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae9345Open in IMG/M
Ga0243985_1006992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5084Open in IMG/M
Ga0243985_1024767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1376Open in IMG/M
Ga0243985_1028502All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1187Open in IMG/M
Ga0243985_1037601Not Available885Open in IMG/M
Ga0243985_1042756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales773Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243985_1000071Ga0243985_100007170F084124LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFXXXXSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0243985_1003806Ga0243985_100380614F026489KENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243985_1003809Ga0243985_10038091F059106IVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243985_1006992Ga0243985_10069923F067844MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLMMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0243985_1024767Ga0243985_10247671F070093IDPPMEPEQERLSKLYSGSGIHSLPELNPNNPYSPHL
Ga0243985_1028502Ga0243985_10285022F090515VCQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0243985_1037601Ga0243985_10376011F044554VLAGRFIPVLCASIARLFPCRTEIARCLMLDFAISRYLFLSFSFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0243985_1042756Ga0243985_10427562F059106IRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
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