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Sample 3300029394
3300029394: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_28_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029394 Open in IMG/M GOLD Reference Gs0133117 | Gp0283158 | Ga0243997 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_28_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 245395161 Sequencing Scaffolds 5 Novel Protein Genes 5 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 3 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F032286 Metagenome / Metatranscriptome 180 Y F052660 Metagenome 142 N F068811 Metagenome 124 N F081354 Metagenome 114 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243997_1001201 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 27333 Open in IMG/M Ga0243997_1002538 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 13386 Open in IMG/M Ga0243997_1003360 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 10228 Open in IMG/M Ga0243997_1005798 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 5889 Open in IMG/M Ga0243997_1017343 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 1762 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243997_1001201 Ga0243997_100120117 F032286 VTPVRHRALIFDTRLSAGNAANDVLITGSTFHFCRLTCLCVKRRNVILNGKRRSLLDSTLFHTDNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQFSRFRCDYKTILAKNIALSRISKR Ga0243997_1002538 Ga0243997_10025389 F068811 MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK Ga0243997_1003360 Ga0243997_10033601 F081354 VPFLSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMEL Ga0243997_1005798 Ga0243997_100579812 F081354 VFSSPFLSAKRALDLVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR Ga0243997_1017343 Ga0243997_10173431 F052660 MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRKRHYGRFLHGGILMGIALPIPSHRAKLHDFAFWWPAAAGHSRSADALPGKSNS
