NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029399

3300029399: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_3_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029399 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133095 | Gp0281866 | Ga0242750
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_3_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size116372553
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047125Metagenome / Metatranscriptome150N
F056309Metagenome137N
F070093Metagenome123N
F088920Metagenome109Y
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242750_100258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales45065Open in IMG/M
Ga0242750_100922All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena17081Open in IMG/M
Ga0242750_101416All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena11838Open in IMG/M
Ga0242750_101632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena10506Open in IMG/M
Ga0242750_105132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena3449Open in IMG/M
Ga0242750_123114All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes802Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242750_100258Ga0242750_10025822F088920VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAIPLLFVPTLFSARLTAFSLHTSPKISGQTSLHQPWLSPYCLFKD
Ga0242750_100922Ga0242750_10092217F056309MWNAVRNTKRVRSTVKETKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0242750_101416Ga0242750_10141613F056309CLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0242750_101632Ga0242750_10163210F056309TKRMCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0242750_105132Ga0242750_1051321F070093FESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLSELNPKSN
Ga0242750_108554Ga0242750_1085543F101356VGELIPVVTPGKDGLSNSKFATTKIKSEGKRSVLLYRSLASQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0242750_123114Ga0242750_1231141F047125VVLLLMVLGVMSSGFWAADALDHMRQEILQQEGKRRGWWS
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