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Sample 3300029404
3300029404: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_11_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029404 Open in IMG/M GOLD Reference Gs0133117 | Gp0282985 | Ga0243824 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_11_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 173793716 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F059106 Metagenome 134 N F067844 Metagenome 125 N F078004 Metagenome 117 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243824_101754 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 15164 Open in IMG/M Ga0243824_102534 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae 8563 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243824_101754 Ga0243824_1017541 F067844 MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRS Ga0243824_102534 Ga0243824_1025341 F059106 AIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV Ga0243824_104938 Ga0243824_1049383 F078004 LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMIRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
