NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029405

3300029405: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_4_29_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029405 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133117 | Gp0283120 | Ga0243959
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_4_29_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size153826970
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070093Metagenome123N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243959_128252All Organisms → cellular organisms → Bacteria698Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243959_128252Ga0243959_1282521F070093LAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNLI

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