NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029407

3300029407: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_27_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029407 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282925 | Ga0243764
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_27_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size158496013
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F047125Metagenome / Metatranscriptome150N
F056309Metagenome137N
F068811Metagenome124N
F070093Metagenome123N
F074899Metagenome / Metatranscriptome119N
F078693Metagenome116N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243764_100128All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii97998Open in IMG/M
Ga0243764_100852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae25097Open in IMG/M
Ga0243764_100999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena21993Open in IMG/M
Ga0243764_102361All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10085Open in IMG/M
Ga0243764_102837All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena8437Open in IMG/M
Ga0243764_108333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2723Open in IMG/M
Ga0243764_108828All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2560Open in IMG/M
Ga0243764_114531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1486Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243764_100128Ga0243764_10012869F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0243764_100852Ga0243764_1008521F056309GTKRTCLRRTPSLSVVPLFLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243764_100999Ga0243764_1009991F070093FCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPN
Ga0243764_102361Ga0243764_10236116F029444MEVSGQLTGFEREDLMSWTASNLQRPLREDVSLEISGIIAEKESQILGRRFVGFDGPKKAAPFFNF
Ga0243764_102837Ga0243764_1028371F056309RSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243764_108333Ga0243764_1083331F078693MWNIGSFSFERLHAPVRGGERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS
Ga0243764_108828Ga0243764_1088283F047125MDVVLLLMVLGVMLSGFRAADAMDHMRKEIIRQEGKRRGWWS
Ga0243764_114531Ga0243764_1145314F074899MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSTEKP
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