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Sample 3300029419
3300029419: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_27_stool_2
Overview
Basic Information
IMG/M Taxon OID 3300029419 Open in IMG/M GOLD Reference Gs0133117 | Gp0283074 | Ga0243913 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_27_stool_2 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 198389714 Sequencing Scaffolds 5 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 2 All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243913_100137 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia 132345 Open in IMG/M Ga0243913_100373 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 79371 Open in IMG/M Ga0243913_100919 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 39493 Open in IMG/M Ga0243913_101921 All Organisms → cellular organisms → Bacteria 18163 Open in IMG/M Ga0243913_103854 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 7346 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243913_100137 Ga0243913_100137115 F059106 VILLQKFVWIVDLKVREHLTEYLKKDIKYHRVIIGVHV Ga0243913_100373 Ga0243913_1003731 F070093 NFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN Ga0243913_100919 Ga0243913_1009191 F056309 MWNAVRNSWRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD Ga0243913_101921 Ga0243913_1019211 F042095 DPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQACKMTSFPIVDIPGLEFLAVSHTMYVNDGIPVDKLSRSKKLIYIDLQNAGQRMTVIPEAITNKTEVYYLYMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFAFLNDWKNGERRTGWNDDNMSGRGLEHLTSLGATHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGRRNQFYGLSVSMYNSTYPYENQRPTGQEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKP Ga0243913_103854 Ga0243913_1038548 F078693 MVVAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGVVETEKS
