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Sample 3300029427
3300029427: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_29_stool_2
Overview
Basic Information
IMG/M Taxon OID 3300029427 Open in IMG/M GOLD Reference Gs0133117 | Gp0283050 | Ga0243889 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_29_stool_2 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 194084816 Sequencing Scaffolds 5 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 2 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 1 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243889_1003779 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 6430 Open in IMG/M Ga0243889_1006049 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 4244 Open in IMG/M Ga0243889_1023487 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 1289 Open in IMG/M Ga0243889_1026741 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 1145 Open in IMG/M Ga0243889_1033107 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides 945 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243889_1003779 Ga0243889_10037794 F068811 MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNGCRI Ga0243889_1006049 Ga0243889_10060496 F076189 VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDSHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL Ga0243889_1023487 Ga0243889_10234871 F026592 CWRRTVCQNRLRTASPQGIAALAVQGGVATLTERSDETFSVMQPFSADRE Ga0243889_1026741 Ga0243889_10267414 F087335 MPELYFNDANLLPESCEAEQYAEAVLNDILAGKTANKEMCILPCFYHAPMCKGVLIYLDDGTTLRIKPTLNEVGEPELLIRCVTEETVEEVYQWVSNYDFDEPCAGNMPS Ga0243889_1033107 Ga0243889_10331073 F051936 GQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK
