Sample 3300029428

Overview

Basic Information
IMG/M Taxon OID	3300029428 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133095 \| Gp0281904 \| Ga0242788
Sample Name	Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	210206419
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F070093	Metagenome	123	N
F078822	Metagenome	116	N
F088920	Metagenome	109	Y

Family

Category

Number of Sequences

3D Structure?

F056309

Metagenome

137

F070093

Metagenome

123

F078822

Metagenome

116

F088920

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0242788_101243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	26428	Open in IMG/M
Ga0242788_101257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	26026	Open in IMG/M
Ga0242788_101337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	24209	Open in IMG/M
Ga0242788_101475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21415	Open in IMG/M
Ga0242788_102562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10702	Open in IMG/M
Ga0242788_102722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	9956	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0242788_101243

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

26428

Open in IMG/M

Ga0242788_101257

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

26026

Open in IMG/M

Ga0242788_101337

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

24209

Open in IMG/M

Ga0242788_101475

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

21415

Open in IMG/M

Ga0242788_102562

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

10702

Open in IMG/M

Ga0242788_102722

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

9956

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0242788_101243	Ga0242788_10124323	F078822	FPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0242788_101257	Ga0242788_10125710	F056309	VXXXXPSLSVVPLLLGDSDSLSVSYGYGMEPEQEALSIVSFKD
Ga0242788_101337	Ga0242788_1013371	F070093	RVSNFESLLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0242788_101475	Ga0242788_10147518	F078822	SFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0242788_102562	Ga0242788_10256210	F088920	LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLHQPWLSPYCLFKD
Ga0242788_102722	Ga0242788_1027221	F070093	SLLLAEFCPFRIDPPMEPEQEHLSKLYSVSGIHSLPELNPD

Scaffold ID

Protein ID

Family

Sequence

Ga0242788_101243

Ga0242788_10124323

F078822

FPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0242788_101257

Ga0242788_10125710

F056309

VXXXXPSLSVVPLLLGDSDSLSVSYGYGMEPEQEALSIVSFKD

Ga0242788_101337

Ga0242788_1013371

F070093

RVSNFESLLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN

Ga0242788_101475

Ga0242788_10147518

F078822

SFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL

Ga0242788_102562

Ga0242788_10256210

F088920

LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLHQPWLSPYCLFKD

Ga0242788_102722

Ga0242788_1027221

F070093

SLLLAEFCPFRIDPPMEPEQEHLSKLYSVSGIHSLPELNPD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029428: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences