NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029430

3300029430: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_4_27_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029430 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283083 | Ga0243922
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_4_27_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size240452152
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea formicigenerans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055715Metagenome138N
F056309Metagenome137N
F059106Metagenome134N
F070093Metagenome123N
F089053Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243922_100710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques48809Open in IMG/M
Ga0243922_100885All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena40565Open in IMG/M
Ga0243922_101424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii27612Open in IMG/M
Ga0243922_101744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena22718Open in IMG/M
Ga0243922_107383All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea formicigenerans4675Open in IMG/M
Ga0243922_107638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea4492Open in IMG/M
Ga0243922_107896All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae4321Open in IMG/M
Ga0243922_109663All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3443Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243922_100710Ga0243922_1007101F059106LQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243922_100885Ga0243922_1008851F056309TKRTCLRRTPSLNVVPLLLGDSDSLSVSYGMEPEQEALSIVFFKD
Ga0243922_101424Ga0243922_10142413F089053MILCRAKRALFQFGSRNGCVVGGCRPAKGYIKKWVHESANGQPELSTAEEVNVKNMEVFL
Ga0243922_101744Ga0243922_1017441F070093RVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0243922_107383Ga0243922_1073831F059106MHASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243922_107638Ga0243922_1076384F056309MCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFMD
Ga0243922_107896Ga0243922_1078966F059106MHAIVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0243922_109663Ga0243922_1096631F055715LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNERFCDKINELIQVETAKILDN
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