NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029431

3300029431: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_28_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029431 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282919 | Ga0243758
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_28_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size217984421
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F047126Metagenome150N
F056309Metagenome137N
F059106Metagenome134N
F070093Metagenome123N
F087336Metagenome110N
F089053Metagenome109Y
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243758_1001231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena27974Open in IMG/M
Ga0243758_1002304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena16013Open in IMG/M
Ga0243758_1002407All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena15405Open in IMG/M
Ga0243758_1004038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii9072Open in IMG/M
Ga0243758_1005731All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia5933Open in IMG/M
Ga0243758_1012832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2176Open in IMG/M
Ga0243758_1018040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1484Open in IMG/M
Ga0243758_1023603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741128Open in IMG/M
Ga0243758_1025650All Organisms → cellular organisms → Bacteria1043Open in IMG/M
Ga0243758_1028962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena928Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243758_1001231Ga0243758_100123132F056309KGTKRTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKN
Ga0243758_1002304Ga0243758_10023041F056309PSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0243758_1002331Ga0243758_10023311F101356RFMDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0243758_1002407Ga0243758_10024071F056309KRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243758_1004038Ga0243758_100403813F089053CVSKMEGPRPDKFAFGVRIGRVVDGCRPIKGCITKRIHGSANGQPELSAGREVEVKNWRLHL
Ga0243758_1005731Ga0243758_10057311F059106LQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243758_1012832Ga0243758_10128324F032286MVKWVCQIVTPVRHRALIFDVRLFTGNTAXXXXDDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL
Ga0243758_1018040Ga0243758_10180403F056309TCLRRTPSLSVVPLFLGASDSLSVSYGMEPEQEALSTVSFKD
Ga0243758_1023603Ga0243758_10236032F047126MTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSELNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRCFHILSKKLQKTC
Ga0243758_1025650Ga0243758_10256501F087336LSDTPISSSMHCLLRGMVAELEQVPKAFRAADNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0243758_1028962Ga0243758_10289621F070093ESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPKQI
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