NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029433

3300029433: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_30_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029433 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282922 | Ga0243761
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_30_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size238833741
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F056309Metagenome137N
F059106Metagenome134N
F067845Metagenome125N
F070093Metagenome123N
F076064Metagenome118N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243761_1002650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena15949Open in IMG/M
Ga0243761_1002971All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae14367Open in IMG/M
Ga0243761_1009445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3974Open in IMG/M
Ga0243761_1011871All Organisms → cellular organisms → Bacteria3002Open in IMG/M
Ga0243761_1018878All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1697Open in IMG/M
Ga0243761_1019656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1616Open in IMG/M
Ga0243761_1022698All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1355Open in IMG/M
Ga0243761_1027412All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1077Open in IMG/M
Ga0243761_1028757All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1020Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243761_1002650Ga0243761_10026501F056309VKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0243761_1002971Ga0243761_100297115F059106VILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243761_1009445Ga0243761_10094455F026592VCQNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0243761_1011871Ga0243761_10118711F070093CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNYADSIS
Ga0243761_1018878Ga0243761_10188781F076064ENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0243761_1019656Ga0243761_10196563F056309TVKGTKRTCLRRTPSLSVVPLFLGASDSLSVSYGMEPEQEALSTVSFKD
Ga0243761_1022698Ga0243761_10226983F056309CLRRTPSLSVVPLLLGDSDSLSVSYGIEPEQEALSIVSFKD
Ga0243761_1027412Ga0243761_10274121F070093CRVSTFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPKQI
Ga0243761_1028757Ga0243761_10287571F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
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