NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029453

3300029453: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001908-98



Overview

Basic Information
IMG/M Taxon OID3300029453 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283327 | Ga0244150
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001908-98
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85709853
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F052660Metagenome142N
F068855Metagenome124N
F100397Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244150_100753All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales15845Open in IMG/M
Ga0244150_101402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae7485Open in IMG/M
Ga0244150_101405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae7474Open in IMG/M
Ga0244150_102699All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4061Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244150_100753Ga0244150_10075312F052660MCILRVLSENTSEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNF
Ga0244150_101402Ga0244150_1014029F100397MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAPVEPLFYKSAPGLSIQHDGQSVRALPGTSSWQYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEG
Ga0244150_101405Ga0244150_10140511F068855VEVQGPQARKSLAPQGLQAEKESENVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0244150_102699Ga0244150_1026994F029444MGVSEQLTRFEPEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
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