NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029469

3300029469: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001926-13



Overview

Basic Information
IMG/M Taxon OID3300029469 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283345 | Ga0244168
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001926-13
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size114212648
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062845Metagenome130N
F067845Metagenome125N
F073656Metagenome120N
F078693Metagenome116N
F089053Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244168_100086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii142265Open in IMG/M
Ga0244168_100965All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes22609Open in IMG/M
Ga0244168_101011All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii21594Open in IMG/M
Ga0244168_103347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4454Open in IMG/M
Ga0244168_105769Not Available2212Open in IMG/M
Ga0244168_106769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1820Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244168_100086Ga0244168_10008645F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDNLNHFLFWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244168_100965Ga0244168_1009654F073656MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244168_101011Ga0244168_10101116F062845MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSC
Ga0244168_103347Ga0244168_1033473F089053LFRFGSRNGCVVGGCRLIKGCIRKWIHGFAYGQPELSTAKEANVKKMEVIL
Ga0244168_105769Ga0244168_1057693F078693MVLALVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDP
Ga0244168_106769Ga0244168_1067694F078693MVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGYSPLXXXXXXXX
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