Sample 3300029480

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300029480

3300029480: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001834-56

Overview

Basic Information
IMG/M Taxon OID	3300029480 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133130 \| Gp0283256 \| Ga0244079
Sample Name	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001834-56
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	152818570
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	China: Shanghai
Coordinates	Lat. (^o)	31.2123446	Long. (^o)	121.4684853	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0244079_105285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4073	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244079_105285	Ga0244079_1052851	F070093	LAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPN

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