NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029481

3300029481: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13



Overview

Basic Information
IMG/M Taxon OID3300029481 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283230 | Ga0244053
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size170724719
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F062845Metagenome130N
F067845Metagenome125N
F068855Metagenome124N
F071325Metagenome122N
F087335Metagenome110N
F087336Metagenome110N
F090514Metagenome108N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244053_100168All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia74259Open in IMG/M
Ga0244053_100271All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales54943Open in IMG/M
Ga0244053_100396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales43398Open in IMG/M
Ga0244053_100565All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes34286Open in IMG/M
Ga0244053_100578All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii33811Open in IMG/M
Ga0244053_100664All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii30141Open in IMG/M
Ga0244053_101632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii14402Open in IMG/M
Ga0244053_104501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5959Open in IMG/M
Ga0244053_110244All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2754Open in IMG/M
Ga0244053_121593All Organisms → cellular organisms → Bacteria1335Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244053_100168Ga0244053_10016822F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244053_100271Ga0244053_10027135F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDTVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKDKFTTRLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEFRK
Ga0244053_100271Ga0244053_10027136F097172MKPGKVKMSKQGNVYVGKSSKSFPFFLDVFQNGSIYKVKGPKDFLSAAYSNIFYLWNPKEGFIMKKNVLKKLMCAVLAAACVATAVVPAMADDVITVEAATKKVTSAYKYHLEGYDKKGYVMDGFSKASFCKDLNSLPAVKTGKTAINVPAVTSSVKSISKEKRNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLAKFRIIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK
Ga0244053_100271Ga0244053_10027137F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPTVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVVTFDNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKRPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0244053_100396Ga0244053_10039645F068855VPTVEAQGPQVRKSLAPQGLQDEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0244053_100565Ga0244053_10056531F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTADTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0244053_100578Ga0244053_10057813F026489MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0244053_100664Ga0244053_10066423F026489MEQGRGEEDVAERCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0244053_101632Ga0244053_1016325F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0244053_104501Ga0244053_1045013F062845MDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT
Ga0244053_110244Ga0244053_1102446F087336MVCFLTGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERGTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244053_121593Ga0244053_1215931F071325ISKVVLFVKHFFDIFLSFPNPFLKAFHLHAVRFPAAFLLVHRFYLDFEELLSCATAYL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.