NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029484

3300029484: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001871-18



Overview

Basic Information
IMG/M Taxon OID3300029484 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283293 | Ga0244116
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001871-18
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size156657382
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F042936Metagenome157N
F044554Metagenome154N
F056309Metagenome137N
F062845Metagenome130N
F067845Metagenome125N
F068811Metagenome124N
F076064Metagenome118N
F078693Metagenome116N
F087334Metagenome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244116_100200All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii86350Open in IMG/M
Ga0244116_100555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae40885Open in IMG/M
Ga0244116_101418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18054Open in IMG/M
Ga0244116_101569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae16287Open in IMG/M
Ga0244116_101597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii16080Open in IMG/M
Ga0244116_102480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii10297Open in IMG/M
Ga0244116_106791All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii3096Open in IMG/M
Ga0244116_108351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2398Open in IMG/M
Ga0244116_118386Not Available1047Open in IMG/M
Ga0244116_119682Not Available980Open in IMG/M
Ga0244116_132783All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes601Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244116_100200Ga0244116_10020073F062845MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRTCT
Ga0244116_100555Ga0244116_10055530F044554VYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLCFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244116_101418Ga0244116_1014185F042936VWKTKEGIMKTSGIVDRGEDTIRNVEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0244116_101569Ga0244116_1015695F087334MTSRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ
Ga0244116_101597Ga0244116_1015977F078693LRADGAGLERFFIKANCSLLMSKENQKTTSDFDALDPRERGYSPLSDPKEEVETEKS
Ga0244116_102480Ga0244116_1024804F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0244116_106791Ga0244116_1067914F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY
Ga0244116_108351Ga0244116_1083514F068811MDQDGSEHNICSNREGLCPGKEQHGASGRKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0244116_118386Ga0244116_1183861F042095SDGSYRIVFRSLDIEYKKNPDDTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTMYVNGGIPVDKLSRSKKLIYINLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKINPGPSDMWNYFDINTLPFFEVDKINPNITDFCFLNDWASGERGTGWNDDNMSGRGLEHLTGFFAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNVIYPTENQRPSGTEQAPE
Ga0244116_119682Ga0244116_1196822F056309TPSLSVVPLLLGDSDSLSVSYGMEPEQEALAIVSFKD
Ga0244116_132783Ga0244116_1327831F076064VGTNGEEGFRHHISEELKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY
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