NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029494

3300029494: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029494 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283172 | Ga0244011
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size256433179
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1582
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044555Metagenome / Metatranscriptome154N
F047125Metagenome / Metatranscriptome150N
F052660Metagenome142N
F055775Metagenome138N
F059106Metagenome134N
F067720Metagenome125Y
F068855Metagenome124N
F074899Metagenome / Metatranscriptome119N
F081354Metagenome114Y
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244011_1001255Not Available30515Open in IMG/M
Ga0244011_1008095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1584417Open in IMG/M
Ga0244011_1009122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae3859Open in IMG/M
Ga0244011_1012206All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2763Open in IMG/M
Ga0244011_1013456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2472Open in IMG/M
Ga0244011_1020360All Organisms → Viruses → Predicted Viral1581Open in IMG/M
Ga0244011_1028621All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581119Open in IMG/M
Ga0244011_1028651All Organisms → Viruses → Predicted Viral1118Open in IMG/M
Ga0244011_1046637All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli699Open in IMG/M
Ga0244011_1048245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae676Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244011_1001255Ga0244011_100125551F044555MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLFDTLVDELKGTISRFQAQYKIQEINPDILQNPEDLVSLSQHKR
Ga0244011_1008095Ga0244011_10080958F068855MRKSLAAQGLQAEKESENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0244011_1009122Ga0244011_10091221F059106RVILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0244011_1012206Ga0244011_10122061F097172MKKTMLKKLMCAVLTAVCVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGHTYVFIIDNTLGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYKK
Ga0244011_1013456Ga0244011_10134564F047125MDVALLLMVLGVMLSGFWAADALDHIRREILRQEGKRRGWWS
Ga0244011_1020360Ga0244011_10203601F067720MASTTYRHLGDVTEMFAAQEQFRDITKLVTKRHQFASIGNMVRNAGQLPQPFWLGVGRGGGSRSLSASVARA
Ga0244011_1028621Ga0244011_10286211F074899MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVG
Ga0244011_1028651Ga0244011_10286512F055775MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIALN
Ga0244011_1046637Ga0244011_10466371F081354LVRENQQSSVLNFVKDFSSIFPKSRRRSPLKKGAGCKNPLENGKAEVQTLFEPLSTAISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0244011_1048245Ga0244011_10482451F052660VLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNF
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