NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029512

3300029512: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005365-24



Overview

Basic Information
IMG/M Taxon OID3300029512 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283421 | Ga0244798
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005365-24
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size163142311
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044554Metagenome154N
F056682Metagenome137Y
F071325Metagenome122N
F078693Metagenome116N
F090513Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244798_103793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae6282Open in IMG/M
Ga0244798_104222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae5551Open in IMG/M
Ga0244798_104974All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis4572Open in IMG/M
Ga0244798_120623All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae819Open in IMG/M
Ga0244798_129371Not Available535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244798_103793Ga0244798_1037931F071325LALLSDSSIIISKVVLFVKHFFDIFLSFPNPLLKAFHLHAVRFPAAFLLVHRFYLDFEELLSCATAYL
Ga0244798_104222Ga0244798_1042221F056682ETVKTQSRAGKVVNQLIGQGEMYSASFMAFPSKNRGTFPFQELGKIHENQKVL
Ga0244798_104974Ga0244798_1049743F044554VLAGRFIPVSCASIARLFPCRTEIARCFTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYHFNSHRYCFSAFLVL
Ga0244798_120623Ga0244798_1206232F090513MAKYVRKMEWKLLRIKHILYMRPFGALKIAPQSIGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0244798_129371Ga0244798_1293712F078693MVLALVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLS
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