NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029519

3300029519: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012175-89



Overview

Basic Information
IMG/M Taxon OID3300029519 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283463 | Ga0244840
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012175-89
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size169205247
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F047126Metagenome150N
F050794Metagenome145N
F056309Metagenome137N
F057001Metagenome137Y
F067845Metagenome125N
F068811Metagenome124N
F070093Metagenome123N
F074899Metagenome / Metatranscriptome119N
F087335Metagenome110N
F088921Metagenome109N
F097172Metagenome / Metatranscriptome104Y
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244840_100166All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae97465Open in IMG/M
Ga0244840_100249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM15877908Open in IMG/M
Ga0244840_100301All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii69475Open in IMG/M
Ga0244840_100346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena63225Open in IMG/M
Ga0244840_100506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena48153Open in IMG/M
Ga0244840_100867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales30398Open in IMG/M
Ga0244840_100875All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena30071Open in IMG/M
Ga0244840_101565All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes16915Open in IMG/M
Ga0244840_101852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes14506Open in IMG/M
Ga0244840_101899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae14156Open in IMG/M
Ga0244840_103032All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes8622Open in IMG/M
Ga0244840_104031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium6223Open in IMG/M
Ga0244840_109120All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2524Open in IMG/M
Ga0244840_109866All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2323Open in IMG/M
Ga0244840_130361Not Available737Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244840_100166Ga0244840_1001662F097172MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKALKTGKYVVTLDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDTVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244840_100166Ga0244840_1001663F097172MKKNVLKKLMCAVLATACVVTAVVPAMADDVVTAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKDKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDEFGSDHQSCLSGGNYLKAYSFDMNIEFRK
Ga0244840_100249Ga0244840_10024911F074899MSGRKQWNKQAATSSFLDKKPLESLILQGLEGSAVVGKDEVGSSNLPSSSKKTLKPQWF
Ga0244840_100301Ga0244840_1003019F068811MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVTVSLILNENVSETLCIFSIDKTNGCRI
Ga0244840_100346Ga0244840_10034664F070093LLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNFMEANQ
Ga0244840_100506Ga0244840_1005061F070093CRVSNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPN
Ga0244840_100867Ga0244840_10086739F097172MKKNVFKKLMCAVLAAACVATAVVPAMADDVVTVEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRAILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVAKDKFTTKLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEYRK
Ga0244840_100875Ga0244840_1008751F056309SLSVVPLLLGGSDSLSVSYGMEPEQEALSIVYFKD
Ga0244840_101565Ga0244840_10156521F097493MYKFYMKNGQARFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTDITLEQPTSEQLSQIQSKTFDSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDSE
Ga0244840_101852Ga0244840_10185216F029444MEVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF
Ga0244840_101899Ga0244840_10189910F088921LEAAKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKSAMIRDKMWSKS
Ga0244840_103032Ga0244840_1030328F047126LFPKAYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFFSQTAAASQSKSAYILSSLESPCILCSLLRYFNILSKKLQKTC
Ga0244840_104031Ga0244840_1040316F087335MIELYFNDASLLPENREERQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLDDGTTLRIRPILNEAGEPELLIRCVTEETVEEMYQRVSNYDFDEPCAGNVPS
Ga0244840_109120Ga0244840_1091201F067845SVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0244840_109866Ga0244840_1098663F057001MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSSKEVNEILKDNDIKVDRAIVPALAALAKDKEIVIQLCKEILPRVNNTFCAYKEIEREYYDKNDQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNER
Ga0244840_130361Ga0244840_1303611F050794MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
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