NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029561

3300029561: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI021997-32



Overview

Basic Information
IMG/M Taxon OID3300029561 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283476 | Ga0244853
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI021997-32
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size168214220
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F068811Metagenome124N
F068941Metagenome124N
F073656Metagenome120N
F074899Metagenome / Metatranscriptome119N
F081354Metagenome114Y
F087335Metagenome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244853_100130All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis114317Open in IMG/M
Ga0244853_101076All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii23378Open in IMG/M
Ga0244853_101937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes13210Open in IMG/M
Ga0244853_106461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3297Open in IMG/M
Ga0244853_112344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1663Open in IMG/M
Ga0244853_136272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium635Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244853_100130Ga0244853_10013087F073656MEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQTQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244853_101076Ga0244853_10107617F068811MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAASLILNENVSETLCIFSIDKTNCCRI
Ga0244853_101937Ga0244853_1019376F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMELTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFDLYATGKNATLNG
Ga0244853_106461Ga0244853_1064611F074899MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSKLDKSCV
Ga0244853_112344Ga0244853_1123444F029444MEVSGQLTGFELEDLKSWAVSNLQRPFREDFSLKKSGIIAEKGSQIFGRRFVGFDRPKRAAPFFNFRALAAASEITGRR
Ga0244853_125662Ga0244853_1256621F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPE
Ga0244853_136272Ga0244853_1362722F081354LVRENQQSSAYNFVKDFSSIFSDFSSDQPPKKGAGRKIPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
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