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Sample 3300029574
3300029574: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029574 Open in IMG/M GOLD Reference Gs0133117 | Gp0283023 | Ga0243862 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 165602087 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Falcatimonas → unclassified Falcatimonas → Falcatimonas sp. MSJ-15 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F026592 Metagenome / Metatranscriptome 197 Y F078822 Metagenome 116 N F101356 Metagenome 102 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243862_100556 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 43755 Open in IMG/M Ga0243862_134144 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Falcatimonas → unclassified Falcatimonas → Falcatimonas sp. MSJ-15 681 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243862_100556 Ga0243862_1005561 F078822 SKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL Ga0243862_107774 Ga0243862_1077746 F101356 WAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ Ga0243862_134144 Ga0243862_1341442 F026592 ILCCLRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
