NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029644

3300029644: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029644 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128792 | Gp0224277 | Ga0206083
Sample NameMetatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8298031
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSystems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013355Metagenome / Metatranscriptome272Y
F016972Metagenome / Metatranscriptome243Y
F019791Metagenome / Metatranscriptome227Y
F021083Metagenome / Metatranscriptome220Y
F034033Metagenome / Metatranscriptome175N
F060086Metagenome / Metatranscriptome133Y
F061584Metagenome / Metatranscriptome131Y
F066650Metagenome / Metatranscriptome126Y
F086426Metagenome / Metatranscriptome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0206083_100417Not Available967Open in IMG/M
Ga0206083_100509Not Available913Open in IMG/M
Ga0206083_100583All Organisms → cellular organisms → Bacteria878Open in IMG/M
Ga0206083_100658Not Available842Open in IMG/M
Ga0206083_102110Not Available590Open in IMG/M
Ga0206083_102603Not Available553Open in IMG/M
Ga0206083_102740Not Available545Open in IMG/M
Ga0206083_103259Not Available518Open in IMG/M
Ga0206083_103617Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0206083_100417Ga0206083_1004171F066650GQENVSRMDSPHQGEPRDPHGAKPQHRGGSGSQSNASPPSEGSSSQS
Ga0206083_100509Ga0206083_1005091F061584CLTRRFPFGGSRTRCGIPRPRRRAAVTSHEVGRSTECCERRSCKRIGLLAPSVTSLFPASLSGVTSPPAPVLLRVRVHPPMSFTSPTEYEPLRTCPARFRAKRLPWGFLPHRGTSSQSPLPSELPMSRPHVPPSAFLTPSTVCSSVRLAGLFRPATTSGIHLPGVISRCQAASPRR
Ga0206083_100583Ga0206083_1005831F021083TRSTNLGPPLEVAMVKKGQLEVSKADSPRQGEDRDPNAPKIKRKGGSESQRRARGQHEGSSSEK
Ga0206083_100658Ga0206083_1006581F060086DPFELDSNLLLSSGRHGEDRKRQYLWYDHETPLLDDLADLLYQSGIALIGIV
Ga0206083_102110Ga0206083_1021102F021083MVKKGQLEVSKMDSPKQGEQRNPNAPKIKRKGGSQSQTRSRPQSEGSSSKG
Ga0206083_102538Ga0206083_1025381F086426LMPAKGGQARKPAEHPPRPALGGVARSLAKLTSKLNGLDIRPAGAERQKLVDALRGLAEAACRLDIPVKVAVGVKERKPVVTKRSDRVARA
Ga0206083_102603Ga0206083_1026031F016972PLTDEIPVVNLYLTIYDLYTFSFGTKTSRYGPYELGYRRATITFTIXR
Ga0206083_102740Ga0206083_1027402F019791MYWHNTTTRTSERVAAPSDDDEAVGMLAGHPDSARFVTEYADLRRAGEPVERAMVLVGHEERMSQHDRAPMRLAWRERPSRRARPSAEGYEFLLAQRLREMGGNDHPKGRRSRARV
Ga0206083_103259Ga0206083_1032591F034033QTPLTSEDTNILIAHILDWLYALERQSGLLPQTTEELKYCLLQAELFKLSLRVDPKVIFYHLLFNRVILIDGEFNLSKNVQYDPAQPLLGFVPEDTDKEKISRHFTQALNSTINWVLAVKEIPATCEEFYLEMEKFCVFKCEATWCQILEWLVERQYVVVHGFGGNLEYALK
Ga0206083_103617Ga0206083_1036171F013355TTTDGGVEKVATTMMTKTYFEDLGRIAESNAKSAQQSARIATEYWVASRERNNKVAQDITRTITESMKHQTKANEDLRSRIFVILEERDEAHKRFFEQWAQAFSSVPFEHTRQVMREAHKKTASLK
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