NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029668

3300029668: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36119



Overview

Basic Information
IMG/M Taxon OID3300029668 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283871 | Ga0245235
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36119
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size146982308
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055715Metagenome138N
F067720Metagenome125Y
F068941Metagenome124N
F081354Metagenome114Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245235_100022All Organisms → cellular organisms → Bacteria262057Open in IMG/M
Ga0245235_100084All Organisms → cellular organisms → Bacteria150370Open in IMG/M
Ga0245235_100406All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes56617Open in IMG/M
Ga0245235_102582All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae7900Open in IMG/M
Ga0245235_134843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium518Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245235_100022Ga0245235_100022197F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFIYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0245235_100084Ga0245235_1000843F068941VSLKEQYLDKGVERMDNKKFIIGVILLLLLMIGGTYAYYKWSSSDNMNVNVKIDGGTVTFDGGTNITSTIMPTATKEEGIKKDITVKASKEGVTMNLYMDLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGISYATSGVTTLTLFTGRDVSTSNTDKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0245235_100406Ga0245235_10040616F067720MSSTTYEHFVDTNKMYATHGRFLGLTKTYHLGNVNKLVTFCHRFAALGTMVRNAGQLPQPFWLGAGFGGGSHSLSASVARA
Ga0245235_102582Ga0245235_1025821F055715LTKANEFDRINELLIERTAKKFERASKNKLKKFLTNERFYDKINELIRVGTAKILDN
Ga0245235_134843Ga0245235_1348433F081354VRENQQSSAHNFVKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.