Sample 3300029670

Basic Information
IMG/M Taxon OID	3300029670 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321338 \| Ga0307351
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Phe2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Phe2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	59460968
Sequencing Scaffolds	20
Novel Protein Genes	24
Associated Families	19

Dataset Contents

Total Genome Size

59460968

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	14
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F003987	Metagenome / Metatranscriptome	458	Y
F015738	Metagenome / Metatranscriptome	252	Y
F020914	Metagenome / Metatranscriptome	221	N
F022205	Metatranscriptome	215	Y
F029768	Metagenome / Metatranscriptome	187	N
F033383	Metagenome / Metatranscriptome	177	Y
F034230	Metagenome / Metatranscriptome	175	Y
F042353	Metagenome / Metatranscriptome	158	Y
F054061	Metagenome / Metatranscriptome	140	Y
F062800	Metagenome / Metatranscriptome	130	N
F070158	Metagenome / Metatranscriptome	123	N
F070165	Metagenome / Metatranscriptome	123	N
F070167	Metagenome / Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F078767	Metagenome / Metatranscriptome	116	N
F093490	Metagenome / Metatranscriptome	106	N
F094051	Metagenome / Metatranscriptome	106	N
F099361	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307351_102772	All Organisms → Viruses → Predicted Viral	2521	Open in IMG/M
Ga0307351_105697	Not Available	1698	Open in IMG/M
Ga0307351_105867	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1668	Open in IMG/M
Ga0307351_107891	Not Available	1396	Open in IMG/M
Ga0307351_108881	Not Available	1301	Open in IMG/M
Ga0307351_111670	Not Available	1090	Open in IMG/M
Ga0307351_113693	Not Available	981	Open in IMG/M
Ga0307351_114467	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	947	Open in IMG/M
Ga0307351_118588	Not Available	801	Open in IMG/M
Ga0307351_121993	Not Available	713	Open in IMG/M
Ga0307351_122354	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	705	Open in IMG/M
Ga0307351_124505	Not Available	660	Open in IMG/M
Ga0307351_124527	Not Available	660	Open in IMG/M
Ga0307351_126823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	622	Open in IMG/M
Ga0307351_128243	Not Available	601	Open in IMG/M
Ga0307351_128791	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	593	Open in IMG/M
Ga0307351_129007	Not Available	589	Open in IMG/M
Ga0307351_134006	Not Available	530	Open in IMG/M
Ga0307351_134407	Not Available	525	Open in IMG/M
Ga0307351_136683	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307351_102772	Ga0307351_1027723	F094051	MGNTGILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGDGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGFMKES
Ga0307351_105697	Ga0307351_1056972	F070167	MSWLGNALFGQSRLKGYNMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGILLERLRHCFSEHSLQLVF
Ga0307351_105867	Ga0307351_1058675	F003987	MIPALPCGTFSDSNTPAGAFYVAAFEDGDQTHHVGEYRIETVLRALEALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQMGCIAVVPVGVE
Ga0307351_107616	Ga0307351_1076163	F020914	MAIYQKYGFAIDQILSEDQALPNAQPGDSTNIIELQTIADDGLHIVVCAASTTVELASNATLEIRPTIGATDGTVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSAR
Ga0307351_107891	Ga0307351_1078912	F078767	MTNQITDITDEILIALQKAGCKTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGVLTQLLDISIFIITQNGINKMKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
Ga0307351_108881	Ga0307351_1088812	F033383	DIHAIHSQLGLKAYHDNKPKVMFMHGEPLSSVGNGVSMKAIVDLAPMVDCFIAMRKDEMPIWQSIKRTYLVDKGVDLEVYKPLDGITEKLSGEPSILYVENWRGQRNPLYLCVAMEQVWKKYPNARLHLYNCNDKRMQETFLALSKNNKWWPFLRSLQGGVNGGEEMNLLYNRADIVVSCLYPLYARSVEAFGAGKAFIGTGYREHDYPWQCDLHPDSIAKAVINCWENYDQINYREWAEKYHNAETSTKQCLEIYGRYI
Ga0307351_111670	Ga0307351_1116701	F062800	QQMNQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV
Ga0307351_113693	Ga0307351_1136931	F070165	MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307351_114467	Ga0307351_1144672	F070158	MADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY
Ga0307351_117875	Ga0307351_1178751	F029768	GITKKPTLANLHNCIHYGKIFVCKKELKMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIEEKQREGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK
Ga0307351_118588	Ga0307351_1185881	F093490	MKTFIAFSIIFLTATMAFATPFLVSDPQSGVTSYQITGWSETNVTAQADGSLRMDVGSAVQGTTYNLTIAACNVWGCSTTV
Ga0307351_121993	Ga0307351_1219931	F062800	GLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307351_122354	Ga0307351_1223542	F015738	MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGCAWCLHFDRPIDHRLVKEDRPACIEERNGCAGCPESTYRVRRGPDR
Ga0307351_124505	Ga0307351_1245051	F070165	MRRRGRNARRSTQTLTHTVVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307351_124527	Ga0307351_1245273	F000388	MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKEMKDGS
Ga0307351_126823	Ga0307351_1268232	F034230	SGFILSGTAAPAQGDASGPETNKLRVTVGPFFTQESDKKIPLESAASRVIRKGKRVNITVTVENYGKEKSEPVRLRYMETDGKAAEPRLYRVESIEPGKKWQRTFMARWETSGRKSVTATLVTPEDKPLVDATGKPRPDTSHTGSVSLTVKRM
Ga0307351_128243	Ga0307351_1282431	F042353	PLSLAAREELERIVKDDLEHAAVSSAMVLVEEGGRIVINELVLRLEDGRMVTLMPLDVSAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELDDLVRVWHPEPDTVEEARL
Ga0307351_128243	Ga0307351_1282432	F054061	LCVGDNMDEMFEIIKAGAPDGPPEQALYRIQHTYSDGSGGRLNVDWTGLHRLHDLIHDRIAMEGCVCETCDTKGCHRPATWEIEC
Ga0307351_128791	Ga0307351_1287911	F077342	MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGSIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF
Ga0307351_129007	Ga0307351_1290071	F099361	NIKNTDSISILIANSGNQKIYHPVSEFKADILADVEADETLQDIIIQGVLSNVEADAAFQDIIIQGVLDNVAAPILATESTIIKNSNDPTIAIEITKNTFADTLSENVGNWIIDFGMTTLAFDTITKVSATEMMIKTTGTAEVGTIRILALKDCFDAPIVDSNILEIEVQELEEPEE
Ga0307351_133414	Ga0307351_1334141	F020914	MAIYQKYGFAIDQILSEDQALPNATSEDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0307351_134006	Ga0307351_1340061	F022205	LRTMRNRNNKRFLLPYNKFFTATTGTSTVTANVMGLPLNRPCRPHAIEVRYAHSAPAGVRFKIYAGNSEEVYVSPALVAGQAPQVFRATLPANTDFALYDPAATIMDFAGSATWAIRLIMAHKENMA
Ga0307351_134407	Ga0307351_1344071	F022205	FLLPYNKFHNATEQSTTLTANALGLPLSRPTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA
Ga0307351_136683	Ga0307351_1366831	F022205	NVFGFPLSRPLRPHAVEVRYAHSAPVGVRFRIYAGNGEEVYVSPALVAGPAPQVFRASLPANTDFAMYGPSQIVMDFAGASTWAVRLTMAHKENSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029670: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Phe2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences