NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029683

3300029683: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029683 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114292 | Gp0306344 | Ga0265601
Sample NameMetatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69443466
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → lake → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)N/ADepth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028081Metagenome / Metatranscriptome192Y
F046170Metagenome / Metatranscriptome151Y
F060598Metagenome / Metatranscriptome132Y
F064398Metagenome / Metatranscriptome128Y
F088317Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265601_1004393Not Available1842Open in IMG/M
Ga0265601_1013319Not Available1008Open in IMG/M
Ga0265601_1013758Not Available988Open in IMG/M
Ga0265601_1016270All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon896Open in IMG/M
Ga0265601_1020696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium775Open in IMG/M
Ga0265601_1032186All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon596Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265601_1004393Ga0265601_10043931F046170MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW
Ga0265601_1013319Ga0265601_10133192F046170MIRIEDFGEIGYGGVVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAAALVGGFVWMRRYERWSEHVSHGFLYDLPRFAYNLTKALGTTSKRGSESSAVQEAQRILNERMRAKALTQGSGIPAERSYQQEFETVAPHAF
Ga0265601_1013758Ga0265601_10137581F060598HGTFQHLLHHFPAEDAQHFYAASSRHEVETLGDGPRRVSVDGHNLPRYTRIVAVTKGKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGSKKLRLALPEIVAELRRHRDEGKGPWRLFFDKGDYKGQIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRK
Ga0265601_1016270Ga0265601_10162702F028081EALQRLQKTRRENEEAYLKAKAFMDGFRARGQLSQKDSEFLFLLEFVIKGFKNHGNDIITAFENQVRYTEALNTLHIKVNDLEKEIRQLRITLDKMYQDR
Ga0265601_1020696Ga0265601_10206961F088317MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGIEAPPIPPLEKSQILRVIESGFKEKESIGRYVMTPPPELPYRILSLRTKFVSCNTRHLKEIGAFRTLLPELFGEPGYKAVDDAYASFAYSEFAAAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDDKVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDY
Ga0265601_1032186Ga0265601_10321861F064398TVTLKKLCVMALCTFLLTLAFSGVGNAAPEETPSVYYLEYGGLKIDIRAPDQDYPDENITVTVKTEAVVPQIYVKYINVDLYGVVNATTEVILDQISHLKNSSLSSHEVQYNITIPDNLSPGLTYGIISYEWEFMGSPQKIPPSGFALTYIKNVELEQLQAEYDELNATYQTLFQDYTGLESGLKEEMDSTRNLMYVF
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