NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029684

3300029684: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37269



Overview

Basic Information
IMG/M Taxon OID3300029684 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283830 | Ga0245194
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37269
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size182780516
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F029444Metagenome188Y
F032286Metagenome / Metatranscriptome180Y
F042936Metagenome157N
F055715Metagenome138N
F068855Metagenome124N
F071325Metagenome122N
F073656Metagenome120N
F074899Metagenome / Metatranscriptome119N
F089053Metagenome109Y
F090513Metagenome108N
F090514Metagenome108N
F092227Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245194_100076All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales205215Open in IMG/M
Ga0245194_100150All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes151057Open in IMG/M
Ga0245194_100844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii40095Open in IMG/M
Ga0245194_100885All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales38215Open in IMG/M
Ga0245194_101242All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis26898Open in IMG/M
Ga0245194_101698All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae18826Open in IMG/M
Ga0245194_101769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes17944Open in IMG/M
Ga0245194_101931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales16082Open in IMG/M
Ga0245194_107907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2730Open in IMG/M
Ga0245194_110832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1824Open in IMG/M
Ga0245194_112324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1538Open in IMG/M
Ga0245194_119384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales868Open in IMG/M
Ga0245194_120463All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae811Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245194_100076Ga0245194_10007676F068855VPTISKCPSSSVPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSE
Ga0245194_100150Ga0245194_100150129F073656VLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0245194_100844Ga0245194_10084415F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGAKWFVILLTIVPAGSRAWAGSSLSLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCD
Ga0245194_100885Ga0245194_10088533F089053MEGPRPDKFAFGVRIGRVVDECRPAKGCIKKWIHGSANEQPELSTAKEANGKNMEVFL
Ga0245194_101242Ga0245194_10124210F090513MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYIHLLI
Ga0245194_101698Ga0245194_10169816F071325LGFGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245194_101769Ga0245194_1017697F042936VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKAHFRSRLRGKG
Ga0245194_101931Ga0245194_10193111F032286MVKWVCQIVTPVRHRALIFDTRLFDGNAADDTLVTGNTFRFCRLMCPCVKRRNIMLNDKRHSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSQRFVLLGALDAALRQRTYPVRTVMQFSRFRCDYRTILAKNIALSRISKGSENAPKNADFHAYGQDRKRAEI
Ga0245194_107907Ga0245194_1079075F029444MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAP
Ga0245194_110832Ga0245194_1108322F074899MCGRKQWNKQAATSFFLDKKPPKSLEQQGLEGSTAVGKDEVPSSNLGSSSTKHPLSRRKAGVFFSFCNYF
Ga0245194_112324Ga0245194_1123242F092227QRRPQGEMNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
Ga0245194_119384Ga0245194_1193843F026592TVCQNRLRTASPQGIAALAAQGGVATLTERSDETFSVMQFSSADGE
Ga0245194_120463Ga0245194_1204631F055715LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKLCDKINKLIRVGTAEILDN
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