NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029690

3300029690: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37352



Overview

Basic Information
IMG/M Taxon OID3300029690 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283846 | Ga0245210
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37352
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size180651171
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/742
All Organisms → cellular organisms → Bacteria1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047126Metagenome150N
F052660Metagenome142N
F055715Metagenome138N
F068855Metagenome124N
F078822Metagenome116N
F087335Metagenome110N
F088914Metagenome109N
F088920Metagenome109Y
F088921Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245210_100356All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM15869677Open in IMG/M
Ga0245210_101062All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales26446Open in IMG/M
Ga0245210_102134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae12852Open in IMG/M
Ga0245210_102572All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae10594Open in IMG/M
Ga0245210_105691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4510Open in IMG/M
Ga0245210_106675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3832Open in IMG/M
Ga0245210_107215All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium3513Open in IMG/M
Ga0245210_110100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/742440Open in IMG/M
Ga0245210_114842All Organisms → cellular organisms → Bacteria1570Open in IMG/M
Ga0245210_115511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741487Open in IMG/M
Ga0245210_133086Not Available616Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245210_100356Ga0245210_10035664F068855VPTVEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0245210_101062Ga0245210_1010621F055715LTKANEFDRINELLIERTAKKFERVSKNKLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0245210_102134Ga0245210_10213418F087335MIELYFNDANLMPENREEEQYAEAALNSILAGKTADVEMCIQPCFYDAPLHKGLLYNLDDGTTLRIRPILNEVGEPELLIRCVTEESVETVYQGGANYD
Ga0245210_102572Ga0245210_1025721F052660PENAPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS
Ga0245210_105691Ga0245210_1056916F088920VSANLHHYPAFGAGLILHLILHFSQKAAIFAPKQAILLLFVPTLFFAGLSVFSPQTSPKISGQTSLYQPWLSPYYLFKD
Ga0245210_106675Ga0245210_1066754F078822LSSTFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245210_107215Ga0245210_1072153F087335MIELCLNDAKFLPENREEEQYAEAALNNILAGKTADTEMCIMPCFYDAPLHKGLLYHLNDGTMLRIRPILNEAGEPELLIRCVTEETVEEMYQRVSNYD
Ga0245210_110100Ga0245210_1101006F047126LFPKVYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAANQSKSAYILSSLESPCILCSLLRCFHILSKKLQKTC
Ga0245210_114842Ga0245210_1148422F088920VSARPHYYPAFGIGVILHLILHFSPKAAIFAPKRAILLIFVPTLFFAGLSVLFPHTSPKISGQTSLYQPWLSPYCLFKDQLEMR
Ga0245210_115511Ga0245210_1155113F088921LGATVRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSE
Ga0245210_133086Ga0245210_1330862F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKA
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