NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029725

3300029725: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37323



Overview

Basic Information
IMG/M Taxon OID3300029725 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283844 | Ga0245208
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37323
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size139593422
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068811Metagenome124N
F074899Metagenome / Metatranscriptome119N
F078822Metagenome116N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245208_101088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes18534Open in IMG/M
Ga0245208_108396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1720Open in IMG/M
Ga0245208_111196All Organisms → cellular organisms → Bacteria1294Open in IMG/M
Ga0245208_114398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1013Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245208_101088Ga0245208_10108818F074899MSGRKQWNKQAATSSFLDKKPLESLILQGLEGSTTLGKDEVGSSNLPSSSNINRLNRLI
Ga0245208_108396Ga0245208_1083963F101355MAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFSLFKIYLKKIDFFQNIA
Ga0245208_111196Ga0245208_1111961F078822FLSLPNAFLEAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245208_114398Ga0245208_1143982F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
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