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Sample 3300029758
3300029758: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_1_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029758 Open in IMG/M GOLD Reference Gs0133095 | Gp0281900 | Ga0242784 Sample Name Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_1_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 159734658 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 3 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F056309 Metagenome 137 N F070093 Metagenome 123 N F078822 Metagenome 116 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0242784_100418 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 59263 Open in IMG/M Ga0242784_100675 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 41958 Open in IMG/M Ga0242784_101859 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 13948 Open in IMG/M Ga0242784_102777 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 7499 Open in IMG/M
