NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029776

3300029776: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_29_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029776 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133117 | Gp0282920 | Ga0243759
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_29_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size216747126
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055715Metagenome138N
F056309Metagenome137N
F070093Metagenome123N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243759_101730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena20571Open in IMG/M
Ga0243759_104345All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales8559Open in IMG/M
Ga0243759_107451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena4799Open in IMG/M
Ga0243759_124959All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1218Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243759_101730Ga0243759_1017301F056309KGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243759_104345Ga0243759_1043451F055715LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0243759_107451Ga0243759_1074511F056309SLSVVPLLLGDSDSLSVSYGMEPEQEALSIASFKD
Ga0243759_124959Ga0243759_1249593F070093EFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPKSTQTLS

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