Sample 3300029837

Basic Information
IMG/M Taxon OID	3300029837 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321319 \| Ga0307332
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	52323827
Sequencing Scaffolds	25
Novel Protein Genes	30
Associated Families	25

Dataset Contents

Total Genome Size

52323827

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217

All Organisms → Viruses → environmental samples → uncultured virus

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F017318	Metagenome / Metatranscriptome	241	Y
F020914	Metagenome / Metatranscriptome	221	N
F022205	Metatranscriptome	215	Y
F022444	Metagenome / Metatranscriptome	214	N
F025291	Metagenome / Metatranscriptome	202	N
F031111	Metagenome / Metatranscriptome	183	N
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F047076	Metagenome / Metatranscriptome	150	N
F049017	Metagenome / Metatranscriptome	147	N
F050405	Metagenome / Metatranscriptome	145	N
F051952	Metatranscriptome	143	N
F055836	Metagenome / Metatranscriptome	138	Y
F056712	Metagenome / Metatranscriptome	137	N
F068879	Metagenome / Metatranscriptome	124	N
F070158	Metagenome / Metatranscriptome	123	N
F070165	Metagenome / Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F093911	Metagenome / Metatranscriptome	106	N
F094051	Metagenome / Metatranscriptome	106	N
F097599	Metagenome / Metatranscriptome	104	N
F101223	Metagenome / Metatranscriptome	102	N
F103498	Metagenome / Metatranscriptome	101	N
F105253	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307332_101895	Not Available	2280	Open in IMG/M
Ga0307332_102582	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2016	Open in IMG/M
Ga0307332_104847	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
Ga0307332_105328	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1455	Open in IMG/M
Ga0307332_107193	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1247	Open in IMG/M
Ga0307332_107331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1236	Open in IMG/M
Ga0307332_108621	Not Available	1136	Open in IMG/M
Ga0307332_110908	Not Available	996	Open in IMG/M
Ga0307332_111361	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	972	Open in IMG/M
Ga0307332_112033	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	939	Open in IMG/M
Ga0307332_112242	All Organisms → Viruses → environmental samples → uncultured virus	930	Open in IMG/M
Ga0307332_112608	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	914	Open in IMG/M
Ga0307332_113701	Not Available	872	Open in IMG/M
Ga0307332_114096	Not Available	859	Open in IMG/M
Ga0307332_114410	Not Available	848	Open in IMG/M
Ga0307332_118367	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	732	Open in IMG/M
Ga0307332_118672	Not Available	725	Open in IMG/M
Ga0307332_119387	Not Available	709	Open in IMG/M
Ga0307332_120040	Not Available	695	Open in IMG/M
Ga0307332_121622	Not Available	664	Open in IMG/M
Ga0307332_122850	Not Available	643	Open in IMG/M
Ga0307332_124896	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	611	Open in IMG/M
Ga0307332_131989	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
Ga0307332_132632	Not Available	521	Open in IMG/M
Ga0307332_134704	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307332_101895	Ga0307332_1018953	F047076	MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLQTQILKPKIVNQYEDPNNFRKLDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETVGNHNLEIEYWVNISGAIKPFPTDTGIEIDPNAIEDWNKLIPDISDVEVRLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0307332_102582	Ga0307332_1025821	F097599	PEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQQAEGTGATGGSGDAESTEEQKFANMAAEVAKATGIQFV
Ga0307332_102582	Ga0307332_1025823	F094051	MGNTGILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGIMKES
Ga0307332_104847	Ga0307332_1048471	F012026	ALIGKRAEAINILHRLEKVEDRFNPKIIAEINAYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAAQRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAYEIEHKGGD
Ga0307332_105181	Ga0307332_1051812	F020914	MAIYQKYGFAIDQILSEDQALPKAKSGDSINTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTIGATDGTVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSV
Ga0307332_105328	Ga0307332_1053283	F056712	SNSETAAGLVGILEGLEKSLVRRLMKSSGKQPFLLVFLILFLSMNKKGKKKSEPEKDENYWRVIGGL
Ga0307332_107193	Ga0307332_1071932	F022444	NQLDRKWKKHADEIELEVIQKLKGNSDYHVVEVVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA
Ga0307332_107331	Ga0307332_1073311	F055836	WKYGNIAGAQGCCRPASPVRPRVRRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAHLVDDR
Ga0307332_108621	Ga0307332_1086212	F070165	ASLTSRLTTKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307332_110908	Ga0307332_1109082	F051952	HFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAIFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHRSSI
Ga0307332_111361	Ga0307332_1113611	F068879	NKTATIPNRPVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPPGVTVFANARINK
Ga0307332_112033	Ga0307332_1120331	F093911	NGEITRTEYLAYLDFGYKPSDSVFLTQNKSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307332_112242	Ga0307332_1122421	F017318	RGATRRVTRNKSPQHNMFSPLQAKPLKFERTVEGLYDISCDGINPSVGTWNFSLNDLPSYTEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVDVQFNSAIDPVGNTVTNVSDVLQYRTLKGTAINKIHKRSLVPAYLMDGIVPCACYISCTSPSSNLWGVVYGIAPTGTAMLFKSRAKFYLSFVQSR
Ga0307332_112608	Ga0307332_1126082	F031111	KKEKSRFLVGKKRYISTIPQNSYYQIIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLFKPKISFSKNN
Ga0307332_113701	Ga0307332_1137011	F070165	MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV
Ga0307332_114096	Ga0307332_1140961	F070165	MKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307332_114410	Ga0307332_1144101	F101223	MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTIDYAIKQAQE
Ga0307332_118367	Ga0307332_1183671	F070158	AQNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKE
Ga0307332_118672	Ga0307332_1186721	F025291	TKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307332_119387	Ga0307332_1193871	F050405	MITEQEVITICKANYDANLITQGALLVGMRTVKEIIGSALYKKVEQIGYEELLEKCKTLAAWSVHALMVDRIATEMTNKGVYQLYTVGSNGVQLTELTQIKAAINEITTACANEIKDFIQERVAAHDPLY
Ga0307332_119666	Ga0307332_1196661	F105253	GKMKKIIFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKAYLIQAMQENE
Ga0307332_120040	Ga0307332_1200401	F036251	MSAKERQTVLFGDTGVVAPIDTTERVRLSDGAVFVAQRIEIRPSNKYGEYVVFDGEDLDGKAFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFFTLV
Ga0307332_120040	Ga0307332_1200402	F040648	VINNDEVRLKIDPLLDTAREGVTALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNTTTKSALKEALKGATQEQIERAYAILSGQDTAYEVPAGGEEE
Ga0307332_121622	Ga0307332_1216221	F025291	KHYMVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307332_122850	Ga0307332_1228502	F103498	MFVQDVNTLRMKKMDSIESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVILIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFV
Ga0307332_124896	Ga0307332_1248961	F077342	ITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIDQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVVIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTIDEPAEPREILKLNPKRIF
Ga0307332_131989	Ga0307332_1319892	F012026	MNLRELQATIANIIGQRAEAVDKLNRLMMIEDRFNPENITAINAYKQAIATLSEELTRHERERAELLAREEAARREYVAALNAYDEIYGRFPNAEKEAAELLKRYAKITDAAEKARSIVLEKMNALTAVAGGFLPIPPAPSHAWSTYA
Ga0307332_132632	Ga0307332_1326321	F049017	EISAITMNGTPTPVKFQEFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDATLNTAIVGGSATFIDYN
Ga0307332_133834	Ga0307332_1338341	F020914	DQILSEDQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSVRR
Ga0307332_134704	Ga0307332_1347041	F022205	KFVNATNPTTTITANVMGLPLNRPCRPHAVEVRYAHSAPIGVRFRLYAGNSEEIYVSPALVAGPAPQVFRASLPANTDFAIYDSAATIMDFAGTATWAVRLIMAHKENTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029837: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences